miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22612 5' -58 NC_005091.1 + 26102 0.71 0.32895
Target:  5'- cGUCGUGAUGCGG-UCGAgcaGCgaaaCGGUCu -3'
miRNA:   3'- uCGGCACUACGCCuAGCUa--CG----GCCGG- -5'
22612 5' -58 NC_005091.1 + 34313 0.67 0.549217
Target:  5'- cGCCGgGGUGCGcGAccUgaauccaguagcccUGcgGCCGGCCg -3'
miRNA:   3'- uCGGCaCUACGC-CU--A--------------GCuaCGGCCGG- -5'
22612 5' -58 NC_005091.1 + 27944 0.66 0.561841
Target:  5'- cGGCCGUacgcguugugcgaGAUgaaGCGGAacgcacccaugaUCuGAUcGCCGGCCg -3'
miRNA:   3'- -UCGGCA-------------CUA---CGCCU------------AG-CUA-CGGCCGG- -5'
22612 5' -58 NC_005091.1 + 16094 0.66 0.562897
Target:  5'- cGGCCGU--UGCacccGGAUCGGggacgagGCCaGCCg -3'
miRNA:   3'- -UCGGCAcuACG----CCUAGCUa------CGGcCGG- -5'
22612 5' -58 NC_005091.1 + 52135 0.66 0.591577
Target:  5'- gGGCgCGU--UGCGGA-CGAUGUaaucgaacgaccagCGGCCa -3'
miRNA:   3'- -UCG-GCAcuACGCCUaGCUACG--------------GCCGG- -5'
22612 5' -58 NC_005091.1 + 28945 0.66 0.594782
Target:  5'- aGGCCGUGAU-CGGGUCGuUGC--GCUu -3'
miRNA:   3'- -UCGGCACUAcGCCUAGCuACGgcCGG- -5'
22612 5' -58 NC_005091.1 + 15157 0.66 0.60548
Target:  5'- uGCCGU--UGCgcccGGAUCGGggacgaGaCCGGCCg -3'
miRNA:   3'- uCGGCAcuACG----CCUAGCUa-----C-GGCCGG- -5'
22612 5' -58 NC_005091.1 + 47883 0.66 0.60548
Target:  5'- cGCCG-GGUGCGGuUUGuaGCCGGguCCa -3'
miRNA:   3'- uCGGCaCUACGCCuAGCuaCGGCC--GG- -5'
22612 5' -58 NC_005091.1 + 25094 0.66 0.60548
Target:  5'- cGGCCacgGAgGCGGucgccAUCGAcgcGCCGGCUg -3'
miRNA:   3'- -UCGGca-CUaCGCC-----UAGCUa--CGGCCGG- -5'
22612 5' -58 NC_005091.1 + 24308 0.67 0.541894
Target:  5'- cGCCuUGAUcGCGG--CGAUagGCUGGCCg -3'
miRNA:   3'- uCGGcACUA-CGCCuaGCUA--CGGCCGG- -5'
22612 5' -58 NC_005091.1 + 52105 0.67 0.521157
Target:  5'- uGCCGUGAaaagGCGGc-CGucGCCGGCg -3'
miRNA:   3'- uCGGCACUa---CGCCuaGCuaCGGCCGg -5'
22612 5' -58 NC_005091.1 + 23010 0.67 0.500737
Target:  5'- aGGuuGUGAUGaCGGuAUCGccUGCC-GCCg -3'
miRNA:   3'- -UCggCACUAC-GCC-UAGCu-ACGGcCGG- -5'
22612 5' -58 NC_005091.1 + 48684 0.7 0.369725
Target:  5'- uGCCGUcAUGCGuGcgCacgGCCGGCCa -3'
miRNA:   3'- uCGGCAcUACGC-CuaGcuaCGGCCGG- -5'
22612 5' -58 NC_005091.1 + 51484 0.7 0.378284
Target:  5'- uGCCGc---GCGGAUCGcAUGCacgGGCCa -3'
miRNA:   3'- uCGGCacuaCGCCUAGC-UACGg--CCGG- -5'
22612 5' -58 NC_005091.1 + 7997 0.69 0.393137
Target:  5'- uGCCGUacgaacgugugcgcGA-GgGGAUCGAgGUCGGCCu -3'
miRNA:   3'- uCGGCA--------------CUaCgCCUAGCUaCGGCCGG- -5'
22612 5' -58 NC_005091.1 + 17865 0.69 0.413824
Target:  5'- cGGCCGgGAccugUGCGaGAUCG--GCCGGCg -3'
miRNA:   3'- -UCGGCaCU----ACGC-CUAGCuaCGGCCGg -5'
22612 5' -58 NC_005091.1 + 45925 0.68 0.451348
Target:  5'- uGCCgGUGuUGCGccgcGUCGAUGCgcaGGCCa -3'
miRNA:   3'- uCGG-CACuACGCc---UAGCUACGg--CCGG- -5'
22612 5' -58 NC_005091.1 + 19809 0.68 0.470795
Target:  5'- uGCCGacGUGCGuuUCGAUGCCGuaCu -3'
miRNA:   3'- uCGGCacUACGCcuAGCUACGGCcgG- -5'
22612 5' -58 NC_005091.1 + 52279 0.68 0.480678
Target:  5'- aAGCCccuuaGUGugcguUGCGGAUCGAUucGacagCGGCCa -3'
miRNA:   3'- -UCGG-----CACu----ACGCCUAGCUA--Cg---GCCGG- -5'
22612 5' -58 NC_005091.1 + 44140 0.68 0.49066
Target:  5'- uGCCGagcaGAUGauCGGggCGuAUGCCGGUCu -3'
miRNA:   3'- uCGGCa---CUAC--GCCuaGC-UACGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.