miRNA display CGI


Results 41 - 48 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22612 5' -58 NC_005091.1 + 48684 0.7 0.369725
Target:  5'- uGCCGUcAUGCGuGcgCacgGCCGGCCa -3'
miRNA:   3'- uCGGCAcUACGC-CuaGcuaCGGCCGG- -5'
22612 5' -58 NC_005091.1 + 6598 0.7 0.353008
Target:  5'- aGGCCaGgcacGAUGUGGAUCGA-GUCGGgCg -3'
miRNA:   3'- -UCGG-Ca---CUACGCCUAGCUaCGGCCgG- -5'
22612 5' -58 NC_005091.1 + 6272 0.7 0.344852
Target:  5'- uGGUgGUGGUGCGGGUUG--GCCGGgUg -3'
miRNA:   3'- -UCGgCACUACGCCUAGCuaCGGCCgG- -5'
22612 5' -58 NC_005091.1 + 26102 0.71 0.32895
Target:  5'- cGUCGUGAUGCGG-UCGAgcaGCgaaaCGGUCu -3'
miRNA:   3'- uCGGCACUACGCCuAGCUa--CG----GCCGG- -5'
22612 5' -58 NC_005091.1 + 45933 0.71 0.321973
Target:  5'- cGGCCGcuucguguccggaugGAUGUGGAacgCGAcgaacUGCUGGCCg -3'
miRNA:   3'- -UCGGCa--------------CUACGCCUa--GCU-----ACGGCCGG- -5'
22612 5' -58 NC_005091.1 + 51863 0.71 0.313597
Target:  5'- cGCCGggaaGAUcGCGGAUgCGAUGCUGcGCg -3'
miRNA:   3'- uCGGCa---CUA-CGCCUA-GCUACGGC-CGg -5'
22612 5' -58 NC_005091.1 + 18982 0.72 0.270819
Target:  5'- uGGCCGcGAUgcucgGCGGaAUCG-UGCCGGCg -3'
miRNA:   3'- -UCGGCaCUA-----CGCC-UAGCuACGGCCGg -5'
22612 5' -58 NC_005091.1 + 33590 1.11 0.000431
Target:  5'- cAGCCGUGAUGCGGAUCGAUGCCGGCCu -3'
miRNA:   3'- -UCGGCACUACGCCUAGCUACGGCCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.