Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22612 | 5' | -58 | NC_005091.1 | + | 48684 | 0.7 | 0.369725 |
Target: 5'- uGCCGUcAUGCGuGcgCacgGCCGGCCa -3' miRNA: 3'- uCGGCAcUACGC-CuaGcuaCGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 6598 | 0.7 | 0.353008 |
Target: 5'- aGGCCaGgcacGAUGUGGAUCGA-GUCGGgCg -3' miRNA: 3'- -UCGG-Ca---CUACGCCUAGCUaCGGCCgG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 6272 | 0.7 | 0.344852 |
Target: 5'- uGGUgGUGGUGCGGGUUG--GCCGGgUg -3' miRNA: 3'- -UCGgCACUACGCCUAGCuaCGGCCgG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 26102 | 0.71 | 0.32895 |
Target: 5'- cGUCGUGAUGCGG-UCGAgcaGCgaaaCGGUCu -3' miRNA: 3'- uCGGCACUACGCCuAGCUa--CG----GCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 45933 | 0.71 | 0.321973 |
Target: 5'- cGGCCGcuucguguccggaugGAUGUGGAacgCGAcgaacUGCUGGCCg -3' miRNA: 3'- -UCGGCa--------------CUACGCCUa--GCU-----ACGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 51863 | 0.71 | 0.313597 |
Target: 5'- cGCCGggaaGAUcGCGGAUgCGAUGCUGcGCg -3' miRNA: 3'- uCGGCa---CUA-CGCCUA-GCUACGGC-CGg -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 18982 | 0.72 | 0.270819 |
Target: 5'- uGGCCGcGAUgcucgGCGGaAUCG-UGCCGGCg -3' miRNA: 3'- -UCGGCaCUA-----CGCC-UAGCuACGGCCGg -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 33590 | 1.11 | 0.000431 |
Target: 5'- cAGCCGUGAUGCGGAUCGAUGCCGGCCu -3' miRNA: 3'- -UCGGCACUACGCCUAGCUACGGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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