miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22669 5' -58.5 NC_005091.1 + 51195 0.66 0.60194
Target:  5'- cCACgggCGcGaCGGCGACGAUuuagggUCGUACGUGa -3'
miRNA:   3'- -GUGa--GC-C-GUCGCUGCUG------GGCAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 16369 0.66 0.60194
Target:  5'- aCACgcgCGGCcaAGCGACGuggaacguGCUCG-GCGCGu -3'
miRNA:   3'- -GUGa--GCCG--UCGCUGC--------UGGGCaUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 52792 0.66 0.591361
Target:  5'- gACgCGGCGGCGAUcaGG-CCGcACGCGg -3'
miRNA:   3'- gUGaGCCGUCGCUG--CUgGGCaUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 37029 0.66 0.591361
Target:  5'- aACUCaGCAGCccGCGACuucuCCGUGCGaCGg -3'
miRNA:   3'- gUGAGcCGUCGc-UGCUG----GGCAUGC-GC- -5'
22669 5' -58.5 NC_005091.1 + 45521 0.66 0.590304
Target:  5'- uCGC-CGGguGUGAUGgggacaauguuguACCCGUuCGCGa -3'
miRNA:   3'- -GUGaGCCguCGCUGC-------------UGGGCAuGCGC- -5'
22669 5' -58.5 NC_005091.1 + 10219 0.66 0.579761
Target:  5'- gCGCUCGGCGcGUGcCGGCguaacguCCGUcucGCGCGc -3'
miRNA:   3'- -GUGAGCCGU-CGCuGCUG-------GGCA---UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 13593 0.66 0.570305
Target:  5'- gGCgUCGaGCAGCGACGugaacgguCUCGgcgGCGCa -3'
miRNA:   3'- gUG-AGC-CGUCGCUGCu-------GGGCa--UGCGc -5'
22669 5' -58.5 NC_005091.1 + 55521 0.66 0.559845
Target:  5'- aCGCcCGGCuGaCGGCGGCCgCG-ACGCu -3'
miRNA:   3'- -GUGaGCCGuC-GCUGCUGG-GCaUGCGc -5'
22669 5' -58.5 NC_005091.1 + 18137 0.66 0.559845
Target:  5'- aCACgUCGGuCGGCGcgagcuucGCGGCCCGgcgaucgaGCGUGa -3'
miRNA:   3'- -GUG-AGCC-GUCGC--------UGCUGGGCa-------UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 31864 0.66 0.559845
Target:  5'- gCGCUCGuCGGCGGCcuGCUCGUGcCGUGg -3'
miRNA:   3'- -GUGAGCcGUCGCUGc-UGGGCAU-GCGC- -5'
22669 5' -58.5 NC_005091.1 + 18176 0.67 0.539092
Target:  5'- aGCUCGGCAuCGAgaacaUGAUCC-UGCGCGc -3'
miRNA:   3'- gUGAGCCGUcGCU-----GCUGGGcAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 26221 0.67 0.539092
Target:  5'- aCGCggCGGCAGCuuCGGCCUGa--GCGg -3'
miRNA:   3'- -GUGa-GCCGUCGcuGCUGGGCaugCGC- -5'
22669 5' -58.5 NC_005091.1 + 6178 0.67 0.528813
Target:  5'- gGCUUGcgGGCGACGAgCCGaagcgGCGCGa -3'
miRNA:   3'- gUGAGCcgUCGCUGCUgGGCa----UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 1037 0.67 0.52779
Target:  5'- gCGCggguucCGGCA-CGACGGCUuccggguCGUACGCGa -3'
miRNA:   3'- -GUGa-----GCCGUcGCUGCUGG-------GCAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 30005 0.67 0.52779
Target:  5'- aGCgagCGGuCAGCGGCGucugcgcACCCGUgACGgGg -3'
miRNA:   3'- gUGa--GCC-GUCGCUGC-------UGGGCA-UGCgC- -5'
22669 5' -58.5 NC_005091.1 + 15949 0.67 0.515562
Target:  5'- cCACUUGGCGcucgcggcguccacGCGAUGACCUGcuuguCGCu -3'
miRNA:   3'- -GUGAGCCGU--------------CGCUGCUGGGCau---GCGc -5'
22669 5' -58.5 NC_005091.1 + 4823 0.67 0.508482
Target:  5'- gCGCUCGGC-GCGGCGGCaaCGgucaaGCGg -3'
miRNA:   3'- -GUGAGCCGuCGCUGCUGg-GCaug--CGC- -5'
22669 5' -58.5 NC_005091.1 + 4215 0.67 0.508482
Target:  5'- uGCcCGGCGGCGcgcccgucacCGugCCGUACGUc -3'
miRNA:   3'- gUGaGCCGUCGCu---------GCugGGCAUGCGc -5'
22669 5' -58.5 NC_005091.1 + 55592 0.67 0.49844
Target:  5'- gCGCUCGuGCAgGCGGCGAUCgGcgaagugAUGCGg -3'
miRNA:   3'- -GUGAGC-CGU-CGCUGCUGGgCa------UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 31717 0.68 0.488487
Target:  5'- cCGCcuUCGGCuGCGcCGAaaugCCGUACGCc -3'
miRNA:   3'- -GUG--AGCCGuCGCuGCUg---GGCAUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.