miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22701 3' -49.6 NC_005091.1 + 1463 0.66 0.973653
Target:  5'- -aGCCGGACGAUCc--GGcgGCCGGCc -3'
miRNA:   3'- gcUGGUUUGCUAGcuaCUugUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 57840 0.66 0.973653
Target:  5'- uCGAgCAGcaaucgGCGGUCGAUcAGCGCgcaGGCg -3'
miRNA:   3'- -GCUgGUU------UGCUAGCUAcUUGUGg--CCG- -5'
22701 3' -49.6 NC_005091.1 + 25957 0.66 0.973653
Target:  5'- aCGugCAGGCGcaaGccGAACGCCucGGCa -3'
miRNA:   3'- -GCugGUUUGCuagCuaCUUGUGG--CCG- -5'
22701 3' -49.6 NC_005091.1 + 18427 0.66 0.973653
Target:  5'- aGGCCGGACGuguaGUCGAaaugcgGAAuuguCGCCGGg -3'
miRNA:   3'- gCUGGUUUGC----UAGCUa-----CUU----GUGGCCg -5'
22701 3' -49.6 NC_005091.1 + 446 0.66 0.973653
Target:  5'- uCGAgCAGcaaucgGCGGUCGAUcAGCGCgcaGGCg -3'
miRNA:   3'- -GCUgGUU------UGCUAGCUAcUUGUGg--CCG- -5'
22701 3' -49.6 NC_005091.1 + 56598 0.66 0.973653
Target:  5'- uCGuuCAAAgGGUUGAUGGguuuGCGCCaaGGCg -3'
miRNA:   3'- -GCugGUUUgCUAGCUACU----UGUGG--CCG- -5'
22701 3' -49.6 NC_005091.1 + 32250 0.66 0.970607
Target:  5'- cCGAuCCGGcCGAUaCGAgcaaGAACGCCacGGCg -3'
miRNA:   3'- -GCU-GGUUuGCUA-GCUa---CUUGUGG--CCG- -5'
22701 3' -49.6 NC_005091.1 + 27731 0.66 0.970607
Target:  5'- cCGACCGG--GAUCG-UGGuGCGCCGuGCu -3'
miRNA:   3'- -GCUGGUUugCUAGCuACU-UGUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 2007 0.66 0.970607
Target:  5'- gCGGCCAugcuggcgaacGACGAauaUGGUGAGCcgcaggggACUGGCg -3'
miRNA:   3'- -GCUGGU-----------UUGCUa--GCUACUUG--------UGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 10250 0.66 0.970607
Target:  5'- gGGCCGAucucauCGAacUGAUGGAgGCCGGa -3'
miRNA:   3'- gCUGGUUu-----GCUa-GCUACUUgUGGCCg -5'
22701 3' -49.6 NC_005091.1 + 12154 0.66 0.970607
Target:  5'- gGACgAAGCGcgCGu---ACugCGGCg -3'
miRNA:   3'- gCUGgUUUGCuaGCuacuUGugGCCG- -5'
22701 3' -49.6 NC_005091.1 + 14416 0.66 0.970607
Target:  5'- gCGugCcuGCGGU-GA-GAGCgACCGGCg -3'
miRNA:   3'- -GCugGuuUGCUAgCUaCUUG-UGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 25636 0.66 0.970607
Target:  5'- gCGGgCAGcCGAUCGccGAGCugGCCGcGCa -3'
miRNA:   3'- -GCUgGUUuGCUAGCuaCUUG--UGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 26634 0.66 0.970607
Target:  5'- uCGAguucaCGGGCGGUCGAUcGAGuCGgCGGCc -3'
miRNA:   3'- -GCUg----GUUUGCUAGCUA-CUU-GUgGCCG- -5'
22701 3' -49.6 NC_005091.1 + 37226 0.66 0.969968
Target:  5'- gCGGCCGGAagaugucggcgaGGUCGAUGAccaucGCcCCGaGCg -3'
miRNA:   3'- -GCUGGUUUg-----------CUAGCUACU-----UGuGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 51056 0.66 0.968662
Target:  5'- aCGACUAu-CGAUCGcuugccgauuugcccGUGcGCACCGcGCu -3'
miRNA:   3'- -GCUGGUuuGCUAGC---------------UACuUGUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 53599 0.66 0.967316
Target:  5'- -uACUGGAUGGUucgcCGAUGAACA-CGGCg -3'
miRNA:   3'- gcUGGUUUGCUA----GCUACUUGUgGCCG- -5'
22701 3' -49.6 NC_005091.1 + 28096 0.66 0.963772
Target:  5'- gCGGCCGuucuucaGGUCGAuguugaaguucgUGAGCgggauuucgGCCGGCg -3'
miRNA:   3'- -GCUGGUuug----CUAGCU------------ACUUG---------UGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 9212 0.66 0.963772
Target:  5'- gCGAcCCGAAuCGcgCGGUGuuu-CCGGCg -3'
miRNA:   3'- -GCU-GGUUU-GCuaGCUACuuguGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 45979 0.66 0.963772
Target:  5'- aGGCCAAGCu-UCGAggcUGGACGCUGa- -3'
miRNA:   3'- gCUGGUUUGcuAGCU---ACUUGUGGCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.