miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22716 5' -54.6 NC_005091.1 + 12448 0.66 0.769872
Target:  5'- gUC-GCACugGcCGCGcUCGUCGCGg- -3'
miRNA:   3'- aAGuCGUGugCuGCGC-AGUAGUGCgc -5'
22716 5' -54.6 NC_005091.1 + 26134 0.66 0.769872
Target:  5'- aUCAGCgcguGCGCGGCGagcUgAUCGCGCu -3'
miRNA:   3'- aAGUCG----UGUGCUGCgc-AgUAGUGCGc -5'
22716 5' -54.6 NC_005091.1 + 2422 0.66 0.769872
Target:  5'- aUCuGGCGCACGAC-CGUCuugauggcauUCAgGCGa -3'
miRNA:   3'- aAG-UCGUGUGCUGcGCAGu---------AGUgCGC- -5'
22716 5' -54.6 NC_005091.1 + 47086 0.66 0.75962
Target:  5'- cUUCAGCgACAUGAUggGCGUCAUC-CuCGg -3'
miRNA:   3'- -AAGUCG-UGUGCUG--CGCAGUAGuGcGC- -5'
22716 5' -54.6 NC_005091.1 + 51755 0.66 0.749237
Target:  5'- cUUCAGCACuuCG-CGCGaC-UCGCGCa -3'
miRNA:   3'- -AAGUCGUGu-GCuGCGCaGuAGUGCGc -5'
22716 5' -54.6 NC_005091.1 + 41636 0.66 0.738733
Target:  5'- -aCAGCAUguACGcACGCGcCAUCGUGCa -3'
miRNA:   3'- aaGUCGUG--UGC-UGCGCaGUAGUGCGc -5'
22716 5' -54.6 NC_005091.1 + 24412 0.66 0.738733
Target:  5'- aUCGGCgGCACGACG-GUCGacggccagccuaUCGcCGCGa -3'
miRNA:   3'- aAGUCG-UGUGCUGCgCAGU------------AGU-GCGC- -5'
22716 5' -54.6 NC_005091.1 + 28936 0.66 0.72812
Target:  5'- gUCGGCACGaggccgUGAuCGgGUCGUUGCGCu -3'
miRNA:   3'- aAGUCGUGU------GCU-GCgCAGUAGUGCGc -5'
22716 5' -54.6 NC_005091.1 + 29574 0.66 0.72812
Target:  5'- aUCGGCGCGCGccaGCGUCcuacGUCGCuCGc -3'
miRNA:   3'- aAGUCGUGUGCug-CGCAG----UAGUGcGC- -5'
22716 5' -54.6 NC_005091.1 + 23539 0.67 0.71741
Target:  5'- gUUCcuGCGCcagaugGCGA-GCGUCAUCAUGCa -3'
miRNA:   3'- -AAGu-CGUG------UGCUgCGCAGUAGUGCGc -5'
22716 5' -54.6 NC_005091.1 + 28137 0.67 0.71741
Target:  5'- uUUCGGCcgGCGugGCGUCcGUCGucuuCGCGu -3'
miRNA:   3'- -AAGUCGugUGCugCGCAG-UAGU----GCGC- -5'
22716 5' -54.6 NC_005091.1 + 14100 0.67 0.706615
Target:  5'- -cCAGUACACGGCGgauaUGUgG-CGCGCGa -3'
miRNA:   3'- aaGUCGUGUGCUGC----GCAgUaGUGCGC- -5'
22716 5' -54.6 NC_005091.1 + 26658 0.67 0.706615
Target:  5'- gUCGGCgGCcCGGCGUugagcgCAUCACGCGc -3'
miRNA:   3'- aAGUCG-UGuGCUGCGca----GUAGUGCGC- -5'
22716 5' -54.6 NC_005091.1 + 49225 0.67 0.695746
Target:  5'- gUCAGCACGCGAUGgG-CugcUUugGCa -3'
miRNA:   3'- aAGUCGUGUGCUGCgCaGu--AGugCGc -5'
22716 5' -54.6 NC_005091.1 + 10216 0.67 0.694655
Target:  5'- cUCGGCGCGugcCGGCGUaacguccGUC-UCGCGCGc -3'
miRNA:   3'- aAGUCGUGU---GCUGCG-------CAGuAGUGCGC- -5'
22716 5' -54.6 NC_005091.1 + 41781 0.67 0.681524
Target:  5'- gUUCgAGCGCgugAUGACGCGUCGUgugcugaagaucaaCACGCc -3'
miRNA:   3'- -AAG-UCGUG---UGCUGCGCAGUA--------------GUGCGc -5'
22716 5' -54.6 NC_005091.1 + 52786 0.67 0.662809
Target:  5'- aUCAGgGaCGCGGCgGCGaUCAggccgCACGCGg -3'
miRNA:   3'- aAGUCgU-GUGCUG-CGC-AGUa----GUGCGC- -5'
22716 5' -54.6 NC_005091.1 + 36389 0.68 0.651757
Target:  5'- gUCGGCACgccGCGACGC----UCGCGCa -3'
miRNA:   3'- aAGUCGUG---UGCUGCGcaguAGUGCGc -5'
22716 5' -54.6 NC_005091.1 + 54028 0.68 0.651757
Target:  5'- -cCAGCGCgACGGCGCacGUUuUCACGUa -3'
miRNA:   3'- aaGUCGUG-UGCUGCG--CAGuAGUGCGc -5'
22716 5' -54.6 NC_005091.1 + 2385 0.68 0.651757
Target:  5'- cUUCGGCGucguCGCGAUGCGUCGUgGCu-- -3'
miRNA:   3'- -AAGUCGU----GUGCUGCGCAGUAgUGcgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.