miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2272 5' -52.6 NC_001405.1 + 16263 0.66 0.733438
Target:  5'- cAGGGCcgccgccgcgcguugGGCGGCAGUGCCGGgucGGCgGCg -3'
miRNA:   3'- -UCUCG---------------UUGUUGUCGCGGUU---CCGaUGg -5'
2272 5' -52.6 NC_001405.1 + 6532 0.66 0.733438
Target:  5'- aAGGGCGGCcgccucugcuggaccAACgAGCGCCuacgcggaGAGGUaGCCa -3'
miRNA:   3'- -UCUCGUUG---------------UUG-UCGCGG--------UUCCGaUGG- -5'
2272 5' -52.6 NC_001405.1 + 9733 0.66 0.728944
Target:  5'- cGGGCGGCAGCggguGGCGgUCGGGGUUGu- -3'
miRNA:   3'- uCUCGUUGUUG----UCGC-GGUUCCGAUgg -5'
2272 5' -52.6 NC_001405.1 + 855 0.66 0.728944
Target:  5'- cGAGCAGCcggAGCAGagaGCCuuGGGUccgguuucuaUGCCa -3'
miRNA:   3'- uCUCGUUG---UUGUCg--CGGu-UCCG----------AUGG- -5'
2272 5' -52.6 NC_001405.1 + 17655 0.66 0.728944
Target:  5'- uGGGGUggUAgcgcgcuguugGCAGCaCCAGGGUccUGCCu -3'
miRNA:   3'- -UCUCGuuGU-----------UGUCGcGGUUCCG--AUGG- -5'
2272 5' -52.6 NC_001405.1 + 13043 0.66 0.717637
Target:  5'- uAGcAGCAGCAACAgGCGCgAguuGGGCgucaGCa -3'
miRNA:   3'- -UC-UCGUUGUUGU-CGCGgU---UCCGa---UGg -5'
2272 5' -52.6 NC_001405.1 + 12759 0.66 0.706234
Target:  5'- uAGuGCAACcAUGGaGCCcAGGUUGCCc -3'
miRNA:   3'- -UCuCGUUGuUGUCgCGGuUCCGAUGG- -5'
2272 5' -52.6 NC_001405.1 + 12431 0.66 0.706234
Target:  5'- cGGcAGCAGCcGCAG-GCCAAccGGCUcuCCg -3'
miRNA:   3'- -UC-UCGUUGuUGUCgCGGUU--CCGAu-GG- -5'
2272 5' -52.6 NC_001405.1 + 16325 0.66 0.706234
Target:  5'- cGAGCGgccgccGCAGCAGCcgcgGCCAuuAGuGCUAUg -3'
miRNA:   3'- uCUCGU------UGUUGUCG----CGGU--UC-CGAUGg -5'
2272 5' -52.6 NC_001405.1 + 6822 0.66 0.706234
Target:  5'- gGGAGCGAgGAgguCGG-GaCCGAGGUUGCUa -3'
miRNA:   3'- -UCUCGUUgUU---GUCgC-GGUUCCGAUGG- -5'
2272 5' -52.6 NC_001405.1 + 15578 0.66 0.694749
Target:  5'- cGGGCAACAGCucGGCGCCcaccaccggAAaGUUGCUg -3'
miRNA:   3'- uCUCGUUGUUG--UCGCGG---------UUcCGAUGG- -5'
2272 5' -52.6 NC_001405.1 + 11256 0.66 0.693596
Target:  5'- uGAGCGACAcccaaggguGCAGCugaagcgugacacGCgCGAGGCguacgUGCCg -3'
miRNA:   3'- uCUCGUUGU---------UGUCG-------------CG-GUUCCG-----AUGG- -5'
2272 5' -52.6 NC_001405.1 + 33283 0.66 0.690135
Target:  5'- cGGAGCGGCGGCGGCaGCaguuuauucgcGcGCUGCUg -3'
miRNA:   3'- -UCUCGUUGUUGUCG-CGguu--------C-CGAUGG- -5'
2272 5' -52.6 NC_001405.1 + 10827 0.66 0.683195
Target:  5'- uAGcGCAGCAGCcgccGCGCCuggAAGGaaGCCa -3'
miRNA:   3'- -UCuCGUUGUUGu---CGCGG---UUCCgaUGG- -5'
2272 5' -52.6 NC_001405.1 + 5450 0.67 0.671587
Target:  5'- cAGGGCGAagacCGGCAGCGCUucaGC-ACCa -3'
miRNA:   3'- -UCUCGUU----GUUGUCGCGGuucCGaUGG- -5'
2272 5' -52.6 NC_001405.1 + 29960 0.67 0.671587
Target:  5'- -aGGCGAUGACucAGUGaCGAGGCUGCa -3'
miRNA:   3'- ucUCGUUGUUG--UCGCgGUUCCGAUGg -5'
2272 5' -52.6 NC_001405.1 + 24381 0.67 0.671587
Target:  5'- -aAGCAucuGCAGCGCCAGuGC-GCCa -3'
miRNA:   3'- ucUCGUuguUGUCGCGGUUcCGaUGG- -5'
2272 5' -52.6 NC_001405.1 + 9469 0.67 0.668096
Target:  5'- --cGCGGCGACGGCGCauggucucggugacGGCgcgGCCg -3'
miRNA:   3'- ucuCGUUGUUGUCGCGguu-----------CCGa--UGG- -5'
2272 5' -52.6 NC_001405.1 + 15262 0.67 0.659936
Target:  5'- gGGGGCGGCAGCuucUGCC---GCUGCCu -3'
miRNA:   3'- -UCUCGUUGUUGuc-GCGGuucCGAUGG- -5'
2272 5' -52.6 NC_001405.1 + 15827 0.67 0.659936
Target:  5'- aGGGGCAGguGCGGCGUCu-GGCg--- -3'
miRNA:   3'- -UCUCGUUguUGUCGCGGuuCCGaugg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.