miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22726 3' -55 NC_005091.1 + 56063 0.66 0.745166
Target:  5'- aGAUGCcggucGGCGCguccuacuucauCGCGGGCGACACc -3'
miRNA:   3'- gUUACG-----CCGUGac----------GUGCUCGCUGUGc -5'
22726 3' -55 NC_005091.1 + 55839 0.68 0.615903
Target:  5'- ---aGCGGCgcagccggucagcaACUggcGCACGAGCuGCACGg -3'
miRNA:   3'- guuaCGCCG--------------UGA---CGUGCUCGcUGUGC- -5'
22726 3' -55 NC_005091.1 + 55022 0.72 0.37508
Target:  5'- ---cGCGGCGCUuggcgaGCGCGuugcGGCGGCGCa -3'
miRNA:   3'- guuaCGCCGUGA------CGUGC----UCGCUGUGc -5'
22726 3' -55 NC_005091.1 + 54738 0.69 0.553596
Target:  5'- cCAAaGCGGCACgGCAUGAcugagauucuagGCGACAa- -3'
miRNA:   3'- -GUUaCGCCGUGaCGUGCU------------CGCUGUgc -5'
22726 3' -55 NC_005091.1 + 53756 0.72 0.402131
Target:  5'- --uUGCGaGCAUUGC-CGAGCGcaACGCGu -3'
miRNA:   3'- guuACGC-CGUGACGuGCUCGC--UGUGC- -5'
22726 3' -55 NC_005091.1 + 53208 0.67 0.674266
Target:  5'- aAGUGCGGCGaugaUGaaaugGCGGGCGGCGg- -3'
miRNA:   3'- gUUACGCCGUg---ACg----UGCUCGCUGUgc -5'
22726 3' -55 NC_005091.1 + 52151 0.68 0.645678
Target:  5'- cCAAUGCGGCGaauaucucgaaGCGcGCGGCGCGu -3'
miRNA:   3'- -GUUACGCCGUgacg-------UGCuCGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 51848 0.75 0.252469
Target:  5'- gGAUGCGauGCUGCGCGAGUcGCGCGa -3'
miRNA:   3'- gUUACGCcgUGACGUGCUCGcUGUGC- -5'
22726 3' -55 NC_005091.1 + 51608 0.72 0.38396
Target:  5'- ---cGCGGCACggGCGCGAuuCGGCAUGa -3'
miRNA:   3'- guuaCGCCGUGa-CGUGCUc-GCUGUGC- -5'
22726 3' -55 NC_005091.1 + 50785 0.69 0.575303
Target:  5'- ---aGCGGUACaaGCAUG-GCGACGCu -3'
miRNA:   3'- guuaCGCCGUGa-CGUGCuCGCUGUGc -5'
22726 3' -55 NC_005091.1 + 50580 0.66 0.749336
Target:  5'- cCGGUGCGGUAgUcGCGCaacAGCGuCGCGu -3'
miRNA:   3'- -GUUACGCCGUgA-CGUGc--UCGCuGUGC- -5'
22726 3' -55 NC_005091.1 + 49831 0.68 0.630238
Target:  5'- ---gGCGGC-UUGCGCGuugagcGCGGCACu -3'
miRNA:   3'- guuaCGCCGuGACGUGCu-----CGCUGUGc -5'
22726 3' -55 NC_005091.1 + 49404 0.73 0.332808
Target:  5'- uGAUGCGG-ACgGCACGAGCgcuaucGACGCGu -3'
miRNA:   3'- gUUACGCCgUGaCGUGCUCG------CUGUGC- -5'
22726 3' -55 NC_005091.1 + 49033 0.68 0.604892
Target:  5'- -cGUGCGGUgcugcgggcgcgcuGCUGCgcaccguguGCGGGCGGgGCGa -3'
miRNA:   3'- guUACGCCG--------------UGACG---------UGCUCGCUgUGC- -5'
22726 3' -55 NC_005091.1 + 48709 1.1 0.001006
Target:  5'- cCAAUGCGGCACUGCACGAGCGACACGg -3'
miRNA:   3'- -GUUACGCCGUGACGUGCUCGCUGUGC- -5'
22726 3' -55 NC_005091.1 + 45793 0.69 0.542833
Target:  5'- gCAGUaGcCGGCGCgGCGCGcGGCcGACGCGu -3'
miRNA:   3'- -GUUA-C-GCCGUGaCGUGC-UCG-CUGUGC- -5'
22726 3' -55 NC_005091.1 + 44529 0.69 0.575303
Target:  5'- ---aGCGGCACUG-GCGGGUG-CACc -3'
miRNA:   3'- guuaCGCCGUGACgUGCUCGCuGUGc -5'
22726 3' -55 NC_005091.1 + 44402 0.68 0.641268
Target:  5'- ---aGCGGCACUGCACauuGUGugguGCACc -3'
miRNA:   3'- guuaCGCCGUGACGUGcu-CGC----UGUGc -5'
22726 3' -55 NC_005091.1 + 43102 0.68 0.630238
Target:  5'- --uUGCccGGCGCUuucGCgACGAGCGGgGCGa -3'
miRNA:   3'- guuACG--CCGUGA---CG-UGCUCGCUgUGC- -5'
22726 3' -55 NC_005091.1 + 41727 0.71 0.449861
Target:  5'- ----cUGGCGCUGCACGA-UGGCGCGu -3'
miRNA:   3'- guuacGCCGUGACGUGCUcGCUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.