Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22729 | 5' | -58.2 | NC_005091.1 | + | 3541 | 0.66 | 0.554441 |
Target: 5'- gUCGCCGUcugccaGUUCGaCCG-GGUCAGCa- -3' miRNA: 3'- aAGCGGUA------CGAGC-GGCgCUAGUCGcu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 47070 | 0.72 | 0.25178 |
Target: 5'- -aUGCCAgccagucgaugaagaUGCcgCGCuCGCGGUCAGCGGg -3' miRNA: 3'- aaGCGGU---------------ACGa-GCG-GCGCUAGUCGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 43190 | 0.73 | 0.202409 |
Target: 5'- aUCGCCccGCUCGUCGCGAa-AGCGc -3' miRNA: 3'- aAGCGGuaCGAGCGGCGCUagUCGCu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 40645 | 0.75 | 0.150633 |
Target: 5'- --gGCCGUGCUCGgCGCGGgauaccgacUCGGCGGc -3' miRNA: 3'- aagCGGUACGAGCgGCGCU---------AGUCGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 16340 | 0.66 | 0.512316 |
Target: 5'- cUCGgCGcGUUCGUCGCGAgCGGCGc -3' miRNA: 3'- aAGCgGUaCGAGCGGCGCUaGUCGCu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 20023 | 0.66 | 0.512316 |
Target: 5'- cUUCGCCAcgaacgGCguuaucacUGCCGUGggCGGCGAu -3' miRNA: 3'- -AAGCGGUa-----CGa-------GCGGCGCuaGUCGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 18229 | 0.66 | 0.511279 |
Target: 5'- aUCGCCGggccgcgaaGCUCgGCCGaccgacguguucuCGAUCAGCGu -3' miRNA: 3'- aAGCGGUa--------CGAG-CGGC-------------GCUAGUCGCu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 36494 | 0.67 | 0.495831 |
Target: 5'- -gCGCCGUGCU-GCgGCGGccggaucgaagcggaUCAGCGc -3' miRNA: 3'- aaGCGGUACGAgCGgCGCU---------------AGUCGCu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 7065 | 0.67 | 0.471569 |
Target: 5'- -cCGCCAgcaGCUCGaugaCGCGcggGUCGGCGu -3' miRNA: 3'- aaGCGGUa--CGAGCg---GCGC---UAGUCGCu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 43875 | 0.7 | 0.304622 |
Target: 5'- --aGCCAUGCUCuaUGCGcUCGGCGc -3' miRNA: 3'- aagCGGUACGAGcgGCGCuAGUCGCu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 24391 | 0.69 | 0.386494 |
Target: 5'- --gGCCA-GCcuaUCGCCGCGAUCaaGGCGc -3' miRNA: 3'- aagCGGUaCG---AGCGGCGCUAG--UCGCu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 25330 | 0.67 | 0.481607 |
Target: 5'- -aCGCCGUGggCGaCGUGAUCGGCc- -3' miRNA: 3'- aaGCGGUACgaGCgGCGCUAGUCGcu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 12442 | 0.66 | 0.554441 |
Target: 5'- cUgGCCGcGCUCGUCGCGGUCuuuuuguauAGCc- -3' miRNA: 3'- aAgCGGUaCGAGCGGCGCUAG---------UCGcu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 12209 | 0.69 | 0.377682 |
Target: 5'- aUCGCCAucaucgUGCUCGCCGUGccguUCcGCa- -3' miRNA: 3'- aAGCGGU------ACGAGCGGCGCu---AGuCGcu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 29695 | 0.66 | 0.53323 |
Target: 5'- --gGCCcucccGCUCGcCCGCaccgaGAUCGGCGAg -3' miRNA: 3'- aagCGGua---CGAGC-GGCG-----CUAGUCGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 49551 | 0.67 | 0.491748 |
Target: 5'- aUUgGCC-UGCUCGUCGCGcUCGuGCGc -3' miRNA: 3'- -AAgCGGuACGAGCGGCGCuAGU-CGCu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 17720 | 0.7 | 0.32771 |
Target: 5'- --aGCCggGCaUgGCCGCGAuuaUCGGCGAc -3' miRNA: 3'- aagCGGuaCG-AgCGGCGCU---AGUCGCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 2082 | 0.72 | 0.242911 |
Target: 5'- gUUCGCCA-GCaUgGCCGCGA-CAGCGu -3' miRNA: 3'- -AAGCGGUaCG-AgCGGCGCUaGUCGCu -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 29547 | 0.66 | 0.53323 |
Target: 5'- cUCGCCcgGUUCGCCGaaccgGGaCAGaCGAc -3' miRNA: 3'- aAGCGGuaCGAGCGGCg----CUaGUC-GCU- -5' |
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22729 | 5' | -58.2 | NC_005091.1 | + | 54681 | 0.66 | 0.512316 |
Target: 5'- -gCGCCAUGCUgGaauCGCG--CGGCGAa -3' miRNA: 3'- aaGCGGUACGAgCg--GCGCuaGUCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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