miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22733 5' -49.7 NC_005091.1 + 10291 0.66 0.961286
Target:  5'- uUCACGAaagAGCUggaaaUCgGCGcgAGCgGUCGUa -3'
miRNA:   3'- gAGUGCU---UCGA-----AG-CGUuaUCG-CAGCG- -5'
22733 5' -49.7 NC_005091.1 + 45863 0.66 0.957252
Target:  5'- -aCACGAAGCggcCGUAcgaGUGGCucuacaagcaGUCGCc -3'
miRNA:   3'- gaGUGCUUCGaa-GCGU---UAUCG----------CAGCG- -5'
22733 5' -49.7 NC_005091.1 + 39072 0.66 0.957252
Target:  5'- gCUCGcCGggGUgcgCGCGA-GGCGUUGa -3'
miRNA:   3'- -GAGU-GCuuCGaa-GCGUUaUCGCAGCg -5'
22733 5' -49.7 NC_005091.1 + 11001 0.66 0.957252
Target:  5'- aCUC-UGAugccGGCUUCGCc--GGgGUCGCu -3'
miRNA:   3'- -GAGuGCU----UCGAAGCGuuaUCgCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 17660 0.66 0.957252
Target:  5'- -gCACGAAGCUgguaacgauUCGaCGGgguuGCGUCGa -3'
miRNA:   3'- gaGUGCUUCGA---------AGC-GUUau--CGCAGCg -5'
22733 5' -49.7 NC_005091.1 + 45716 0.66 0.948345
Target:  5'- uUCGCGAAGcCUUCGUccgAGaUGUCGa -3'
miRNA:   3'- gAGUGCUUC-GAAGCGuuaUC-GCAGCg -5'
22733 5' -49.7 NC_005091.1 + 4731 0.67 0.943461
Target:  5'- -gCGCGGAGCUgCGCGAUGcUGUCu- -3'
miRNA:   3'- gaGUGCUUCGAaGCGUUAUcGCAGcg -5'
22733 5' -49.7 NC_005091.1 + 54944 0.67 0.941939
Target:  5'- cCUUACGggGCaagggUUUGCGgggauuuugggcugAUGGCGcCGCc -3'
miRNA:   3'- -GAGUGCuuCG-----AAGCGU--------------UAUCGCaGCG- -5'
22733 5' -49.7 NC_005091.1 + 19185 0.67 0.940391
Target:  5'- --uGCGgcGCUUUGCcGUGGCcccgucgaugaacugGUCGCg -3'
miRNA:   3'- gagUGCuuCGAAGCGuUAUCG---------------CAGCG- -5'
22733 5' -49.7 NC_005091.1 + 20358 0.67 0.932817
Target:  5'- -gCACGGcGGCUacUCGCAAagcGGCGaCGCg -3'
miRNA:   3'- gaGUGCU-UCGA--AGCGUUa--UCGCaGCG- -5'
22733 5' -49.7 NC_005091.1 + 4998 0.67 0.932817
Target:  5'- -gCGCGAAGCauucgaUCGCGuccuGCGcCGCa -3'
miRNA:   3'- gaGUGCUUCGa-----AGCGUuau-CGCaGCG- -5'
22733 5' -49.7 NC_005091.1 + 18149 0.67 0.932817
Target:  5'- -gCGCG-AGCUUCGCGGcccGGCGaUCGa -3'
miRNA:   3'- gaGUGCuUCGAAGCGUUa--UCGC-AGCg -5'
22733 5' -49.7 NC_005091.1 + 23626 0.67 0.927052
Target:  5'- aUCGCGAAuCUUCGCcAUGuccuUGUCGCa -3'
miRNA:   3'- gAGUGCUUcGAAGCGuUAUc---GCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 28350 0.67 0.927052
Target:  5'- gUCACGcAAGC--CGCcAgcGCGUCGCc -3'
miRNA:   3'- gAGUGC-UUCGaaGCGuUauCGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 46545 0.67 0.927052
Target:  5'- gCUCGCGcgacGGCUU-GUcg-AGCGUCGCc -3'
miRNA:   3'- -GAGUGCu---UCGAAgCGuuaUCGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 33522 0.68 0.914635
Target:  5'- uUC-CGAaagAGCUUCGCGcAgcGCGcUCGCg -3'
miRNA:   3'- gAGuGCU---UCGAAGCGU-UauCGC-AGCG- -5'
22733 5' -49.7 NC_005091.1 + 26855 0.68 0.907985
Target:  5'- --gGCGAAGa--CGCGAgccggugcGGCGUCGCa -3'
miRNA:   3'- gagUGCUUCgaaGCGUUa-------UCGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 48733 0.68 0.888583
Target:  5'- aUCACGGucauacaGGCUaCGCGGcgggcugcugcguguUGGUGUCGCc -3'
miRNA:   3'- gAGUGCU-------UCGAaGCGUU---------------AUCGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 21092 0.68 0.886299
Target:  5'- uUCACGAuac-UCGCAGUcGCGcCGCg -3'
miRNA:   3'- gAGUGCUucgaAGCGUUAuCGCaGCG- -5'
22733 5' -49.7 NC_005091.1 + 30154 0.68 0.886299
Target:  5'- -gCGCGggGCUUCGCc--GGCuUCGa -3'
miRNA:   3'- gaGUGCuuCGAAGCGuuaUCGcAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.