miRNA display CGI


Results 21 - 32 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22736 3' -54.1 NC_005091.1 + 44875 0.72 0.418116
Target:  5'- gGGCGGCGGCAAggcgGCCGAagGcacgaagGCAa -3'
miRNA:   3'- gUCGCUGCCGUUaa--CGGCUagCa------CGU- -5'
22736 3' -54.1 NC_005091.1 + 46540 0.66 0.769863
Target:  5'- -cGCGACGGC--UUGUCGAgCGUcGCc -3'
miRNA:   3'- guCGCUGCCGuuAACGGCUaGCA-CGu -5'
22736 3' -54.1 NC_005091.1 + 49881 0.7 0.551708
Target:  5'- gCGGCGAucgcauCGGCAGaaGCCGAUCGaGCc -3'
miRNA:   3'- -GUCGCU------GCCGUUaaCGGCUAGCaCGu -5'
22736 3' -54.1 NC_005091.1 + 51810 0.67 0.717168
Target:  5'- gGGCGuGCGGCuugcGCgCGAUUGUGUAc -3'
miRNA:   3'- gUCGC-UGCCGuuaaCG-GCUAGCACGU- -5'
22736 3' -54.1 NC_005091.1 + 52794 0.7 0.540864
Target:  5'- -cGCGGCGGCGAUcagGCCGcacgCG-GCAg -3'
miRNA:   3'- guCGCUGCCGUUAa--CGGCua--GCaCGU- -5'
22736 3' -54.1 NC_005091.1 + 54251 0.71 0.498279
Target:  5'- gUAGCacGACgGGCAaaacgcGUUGCCGAUCGcGCGg -3'
miRNA:   3'- -GUCG--CUG-CCGU------UAACGGCUAGCaCGU- -5'
22736 3' -54.1 NC_005091.1 + 54341 0.73 0.399325
Target:  5'- -cGCGAuCGGCAAcgcguuUUGCCcGUCGUGCu -3'
miRNA:   3'- guCGCU-GCCGUU------AACGGcUAGCACGu -5'
22736 3' -54.1 NC_005091.1 + 55611 0.66 0.75853
Target:  5'- uCGGCGaagugauGCGGCAA--GCCGGgaugacgaCGUGCAa -3'
miRNA:   3'- -GUCGC-------UGCCGUUaaCGGCUa-------GCACGU- -5'
22736 3' -54.1 NC_005091.1 + 56829 1.09 0.001357
Target:  5'- cCAGCGACGGCAAUUGCCGAUCGUGCAg -3'
miRNA:   3'- -GUCGCUGCCGUUAACGGCUAGCACGU- -5'
22736 3' -54.1 NC_005091.1 + 56909 0.66 0.769863
Target:  5'- --aCGAuCGGCAAUUGCCG-UCGcuggcUGCGc -3'
miRNA:   3'- gucGCU-GCCGUUAACGGCuAGC-----ACGU- -5'
22736 3' -54.1 NC_005091.1 + 56950 0.66 0.790008
Target:  5'- -uGCGAC-GCAGagcggGCCGGcCGUGCAc -3'
miRNA:   3'- guCGCUGcCGUUaa---CGGCUaGCACGU- -5'
22736 3' -54.1 NC_005091.1 + 57380 0.66 0.793959
Target:  5'- aAGCgGGCGGCcaugaaauccucuggAAUUGCgCGGUCaUGCAg -3'
miRNA:   3'- gUCG-CUGCCG---------------UUAACG-GCUAGcACGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.