miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22862 3' -54.2 NC_005137.2 + 42246 0.66 0.933781
Target:  5'- aGCACGcGUUGCcucucaacuacAACGaGCUGCGucCCAUCAa -3'
miRNA:   3'- -UGUGC-UAACG-----------UUGC-CGACGU--GGUGGU- -5'
22862 3' -54.2 NC_005137.2 + 105491 0.7 0.753715
Target:  5'- cGCGCG-UUGCAACGaGCgugacgGCGCCAUg- -3'
miRNA:   3'- -UGUGCuAACGUUGC-CGa-----CGUGGUGgu -5'
22862 3' -54.2 NC_005137.2 + 117248 0.69 0.773319
Target:  5'- cCACGGUUGCcgcugaacauGACGcGCUGCACgGCg- -3'
miRNA:   3'- uGUGCUAACG----------UUGC-CGACGUGgUGgu -5'
22862 3' -54.2 NC_005137.2 + 88579 0.69 0.823339
Target:  5'- uGCGCGcg-GCGGacacaunacguguccCGGCgggGCACCGCCGa -3'
miRNA:   3'- -UGUGCuaaCGUU---------------GCCGa--CGUGGUGGU- -5'
22862 3' -54.2 NC_005137.2 + 40295 0.68 0.861746
Target:  5'- uCACG-UUGC--UGGCacGCACCACCAg -3'
miRNA:   3'- uGUGCuAACGuuGCCGa-CGUGGUGGU- -5'
22862 3' -54.2 NC_005137.2 + 121838 0.67 0.8695
Target:  5'- aACAgGGUUGCAugGccaacGCUGUugCACUu -3'
miRNA:   3'- -UGUgCUAACGUugC-----CGACGugGUGGu -5'
22862 3' -54.2 NC_005137.2 + 84947 0.73 0.597615
Target:  5'- cGCACGcugUGCAGCGGCgGCAUaACCu -3'
miRNA:   3'- -UGUGCua-ACGUUGCCGaCGUGgUGGu -5'
22862 3' -54.2 NC_005137.2 + 123971 0.7 0.757675
Target:  5'- aAUGCGAUUGCGGCGacgaggccgugacgcGCgUGCGCCACg- -3'
miRNA:   3'- -UGUGCUAACGUUGC---------------CG-ACGUGGUGgu -5'
22862 3' -54.2 NC_005137.2 + 31698 0.68 0.845581
Target:  5'- --uUGAUgGCAGCGGCccGC-CCACCAu -3'
miRNA:   3'- uguGCUAaCGUUGCCGa-CGuGGUGGU- -5'
22862 3' -54.2 NC_005137.2 + 59884 0.67 0.88432
Target:  5'- aAUACGAggUGCAACaGCuuauagaaUGgGCCGCCAa -3'
miRNA:   3'- -UGUGCUa-ACGUUGcCG--------ACgUGGUGGU- -5'
22862 3' -54.2 NC_005137.2 + 20383 0.66 0.933781
Target:  5'- gGCGCGuuugUGC-ACGGCcGuCACCACgGa -3'
miRNA:   3'- -UGUGCua--ACGuUGCCGaC-GUGGUGgU- -5'
22862 3' -54.2 NC_005137.2 + 85553 0.74 0.535174
Target:  5'- -aACGcgUGC-GCGuGCUGCGCCGCCc -3'
miRNA:   3'- ugUGCuaACGuUGC-CGACGUGGUGGu -5'
22862 3' -54.2 NC_005137.2 + 78551 0.66 0.932219
Target:  5'- -aACGGUUGCGGCGGagGCGCUugaaacggaagcgcGCCGu -3'
miRNA:   3'- ugUGCUAACGUUGCCgaCGUGG--------------UGGU- -5'
22862 3' -54.2 NC_005137.2 + 105360 0.69 0.773319
Target:  5'- uCGCGAUUGUAGCaGUUGCGCgACa- -3'
miRNA:   3'- uGUGCUAACGUUGcCGACGUGgUGgu -5'
22862 3' -54.2 NC_005137.2 + 113517 1.08 0.003637
Target:  5'- aACACGAUUGCAACGGCUGCACCACCAc -3'
miRNA:   3'- -UGUGCUAACGUUGCCGACGUGGUGGU- -5'
22862 3' -54.2 NC_005137.2 + 40825 0.72 0.618724
Target:  5'- aGCGCGuuugugagaAUUGUAACGcGUUGCACgCGCCAa -3'
miRNA:   3'- -UGUGC---------UAACGUUGC-CGACGUG-GUGGU- -5'
22862 3' -54.2 NC_005137.2 + 75977 0.68 0.853771
Target:  5'- cGCGCGuuggUGC-ACGGCgcacggGCcauuGCCACCAc -3'
miRNA:   3'- -UGUGCua--ACGuUGCCGa-----CG----UGGUGGU- -5'
22862 3' -54.2 NC_005137.2 + 57411 0.68 0.853771
Target:  5'- -aACGAcuucgUUGCGcCGGCUGCAaaGCCGu -3'
miRNA:   3'- ugUGCU-----AACGUuGCCGACGUggUGGU- -5'
22862 3' -54.2 NC_005137.2 + 107500 0.68 0.845581
Target:  5'- aACACGuUUGUggUGGCguuugcGCACC-CCAc -3'
miRNA:   3'- -UGUGCuAACGuuGCCGa-----CGUGGuGGU- -5'
22862 3' -54.2 NC_005137.2 + 97990 0.68 0.837184
Target:  5'- gGCGCGcg-GCGugGG-UGCGCCcGCCAa -3'
miRNA:   3'- -UGUGCuaaCGUugCCgACGUGG-UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.