miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 3' -51 NC_005137.2 + 19591 0.66 0.983512
Target:  5'- gAACuGCGCGACAaGCugUACGCcGAAu -3'
miRNA:   3'- gUUG-CGCGUUGUaCGuuGUGCGaCUU- -5'
22864 3' -51 NC_005137.2 + 93681 0.66 0.983512
Target:  5'- aGAUGCGCAACAgGCccaGCGCcGGAu -3'
miRNA:   3'- gUUGCGCGUUGUaCGuugUGCGaCUU- -5'
22864 3' -51 NC_005137.2 + 91190 0.66 0.983512
Target:  5'- cCGugGCGCGGCGUuugGUuGCACGCg--- -3'
miRNA:   3'- -GUugCGCGUUGUA---CGuUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 81599 0.66 0.983311
Target:  5'- uGACGCgGCAGCAguaagcagggucgUGC-ACACGCcGGAa -3'
miRNA:   3'- gUUGCG-CGUUGU-------------ACGuUGUGCGaCUU- -5'
22864 3' -51 NC_005137.2 + 25509 0.66 0.981408
Target:  5'- aCAugGCGCcgucACGcucguUGCAACGCGCg--- -3'
miRNA:   3'- -GUugCGCGu---UGU-----ACGUUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 51889 0.66 0.981408
Target:  5'- aAACGUguauaguuagaGCAGCGguUGCGACACGUgGAAa -3'
miRNA:   3'- gUUGCG-----------CGUUGU--ACGUUGUGCGaCUU- -5'
22864 3' -51 NC_005137.2 + 108737 0.66 0.981408
Target:  5'- aAACGCGCAGaCAaaCGACGCGCa--- -3'
miRNA:   3'- gUUGCGCGUU-GUacGUUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 45529 0.66 0.981408
Target:  5'- --gUGCGUcACGUGCAGCAauCGaCUGAAc -3'
miRNA:   3'- guuGCGCGuUGUACGUUGU--GC-GACUU- -5'
22864 3' -51 NC_005137.2 + 83210 0.66 0.979108
Target:  5'- gCAACGCGguGaAU-CAACACGUUGAc -3'
miRNA:   3'- -GUUGCGCguUgUAcGUUGUGCGACUu -5'
22864 3' -51 NC_005137.2 + 112026 0.66 0.979108
Target:  5'- uGACGCGCugcGACGUGCucaucAACAUGCg--- -3'
miRNA:   3'- gUUGCGCG---UUGUACG-----UUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 3600 0.66 0.979108
Target:  5'- aGACGCGCAACAguuUGCGACuCGa---- -3'
miRNA:   3'- gUUGCGCGUUGU---ACGUUGuGCgacuu -5'
22864 3' -51 NC_005137.2 + 129985 0.66 0.976604
Target:  5'- gAGCGCGCugaaaGUGCGGCACugaaacggGUUGAAu -3'
miRNA:   3'- gUUGCGCGuug--UACGUUGUG--------CGACUU- -5'
22864 3' -51 NC_005137.2 + 97103 0.66 0.976604
Target:  5'- aCAACGUGCGGguUGUAGCGuCGCa--- -3'
miRNA:   3'- -GUUGCGCGUUguACGUUGU-GCGacuu -5'
22864 3' -51 NC_005137.2 + 50842 0.66 0.976604
Target:  5'- aCAACGCGCAAacgGCGGCAaCGUUu-- -3'
miRNA:   3'- -GUUGCGCGUUguaCGUUGU-GCGAcuu -5'
22864 3' -51 NC_005137.2 + 115739 0.66 0.976604
Target:  5'- gGACGCcaaggugcaacGCAACGUGCG-CGCGCg--- -3'
miRNA:   3'- gUUGCG-----------CGUUGUACGUuGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 9596 0.66 0.976604
Target:  5'- uCAACuaGcCAGCAUGCAGCGuCGCUu-- -3'
miRNA:   3'- -GUUGcgC-GUUGUACGUUGU-GCGAcuu -5'
22864 3' -51 NC_005137.2 + 11857 0.67 0.970946
Target:  5'- -cAUGCGCAaucugugcggacACAUGUAauACGCGCUGc- -3'
miRNA:   3'- guUGCGCGU------------UGUACGU--UGUGCGACuu -5'
22864 3' -51 NC_005137.2 + 31647 0.67 0.970946
Target:  5'- -cGCGCGCGGac-GCGAcCACGCUGu- -3'
miRNA:   3'- guUGCGCGUUguaCGUU-GUGCGACuu -5'
22864 3' -51 NC_005137.2 + 83291 0.67 0.970946
Target:  5'- aCAGCGCGgucaAACAggGCGACcCGCUGu- -3'
miRNA:   3'- -GUUGCGCg---UUGUa-CGUUGuGCGACuu -5'
22864 3' -51 NC_005137.2 + 130851 0.67 0.967776
Target:  5'- gAACGCGUugGACGcGCAGCccGCGcCUGAAu -3'
miRNA:   3'- gUUGCGCG--UUGUaCGUUG--UGC-GACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.