miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22866 5' -56.1 NC_005137.2 + 71020 0.66 0.885485
Target:  5'- cGCGGCGCcauaguauuuuGCAuaaUGCUagGUACGGGCa- -3'
miRNA:   3'- aCGCUGCG-----------CGU---GCGAa-CAUGCUCGca -5'
22866 5' -56.1 NC_005137.2 + 16588 0.66 0.885485
Target:  5'- aUG-GAUGUGCGCGCaUUGaUGCGcGGCGg -3'
miRNA:   3'- -ACgCUGCGCGUGCG-AAC-AUGC-UCGCa -5'
22866 5' -56.1 NC_005137.2 + 56497 0.66 0.885485
Target:  5'- cGCGuCGUGU-CGCgUGUACG-GCGUu -3'
miRNA:   3'- aCGCuGCGCGuGCGaACAUGCuCGCA- -5'
22866 5' -56.1 NC_005137.2 + 72804 0.66 0.885485
Target:  5'- gGCGGCGCGCGCuGCcgucuugaUGUuuagcauguaaAUGAGCGc -3'
miRNA:   3'- aCGCUGCGCGUG-CGa-------ACA-----------UGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 26313 0.66 0.878392
Target:  5'- gGCGGCGCGCugGaCUcuaacACGcGCGUc -3'
miRNA:   3'- aCGCUGCGCGugC-GAaca--UGCuCGCA- -5'
22866 5' -56.1 NC_005137.2 + 49214 0.66 0.878392
Target:  5'- cGCGACGCGCgACGCaaaaacucuaGUGCGguucgcAGUGUu -3'
miRNA:   3'- aCGCUGCGCG-UGCGaa--------CAUGC------UCGCA- -5'
22866 5' -56.1 NC_005137.2 + 103084 0.66 0.878392
Target:  5'- uUGCGAuuacCGCGUGCGCaaUUGguugcCGGGCGa -3'
miRNA:   3'- -ACGCU----GCGCGUGCG--AACau---GCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 115264 0.66 0.878392
Target:  5'- gGCGACGCugGCGcCGCgaccuugGCGAGCa- -3'
miRNA:   3'- aCGCUGCG--CGU-GCGaaca---UGCUCGca -5'
22866 5' -56.1 NC_005137.2 + 49963 0.66 0.871076
Target:  5'- cGCGAUGaGCACuCUUGaUGCGAGUa- -3'
miRNA:   3'- aCGCUGCgCGUGcGAAC-AUGCUCGca -5'
22866 5' -56.1 NC_005137.2 + 31252 0.66 0.86354
Target:  5'- cGCGuCGUGCGCGCUcaacuCGGGCc- -3'
miRNA:   3'- aCGCuGCGCGUGCGAacau-GCUCGca -5'
22866 5' -56.1 NC_005137.2 + 73430 0.66 0.86354
Target:  5'- uUGCGGCGCGCugGgCU----CGAcGCGUu -3'
miRNA:   3'- -ACGCUGCGCGugC-GAacauGCU-CGCA- -5'
22866 5' -56.1 NC_005137.2 + 68800 0.66 0.861238
Target:  5'- cGCGGCaGCGCAaacuCGCUUGUuaaaacuaaagaagACGccAGCGg -3'
miRNA:   3'- aCGCUG-CGCGU----GCGAACA--------------UGC--UCGCa -5'
22866 5' -56.1 NC_005137.2 + 42671 0.66 0.855792
Target:  5'- cGCGACGCcaaGCGCGCaaucgACGGGUa- -3'
miRNA:   3'- aCGCUGCG---CGUGCGaaca-UGCUCGca -5'
22866 5' -56.1 NC_005137.2 + 35529 0.66 0.855792
Target:  5'- gUGCGGCGCGCAUcCgaccgGUACGuuGCa- -3'
miRNA:   3'- -ACGCUGCGCGUGcGaa---CAUGCu-CGca -5'
22866 5' -56.1 NC_005137.2 + 72353 0.66 0.855005
Target:  5'- cUGCGccgcuccGCGUGCACGCUagUGUACacGCGc -3'
miRNA:   3'- -ACGC-------UGCGCGUGCGA--ACAUGcuCGCa -5'
22866 5' -56.1 NC_005137.2 + 14747 0.67 0.847836
Target:  5'- cGUGACGCaGCACGCgu-UGCaaauAGCGUa -3'
miRNA:   3'- aCGCUGCG-CGUGCGaacAUGc---UCGCA- -5'
22866 5' -56.1 NC_005137.2 + 67231 0.67 0.839681
Target:  5'- cGCGACcuuCGCACGgUUcUACGGGCa- -3'
miRNA:   3'- aCGCUGc--GCGUGCgAAcAUGCUCGca -5'
22866 5' -56.1 NC_005137.2 + 1262 0.67 0.831333
Target:  5'- gGUGAagGCGCuacaaACGCUUGaGCGGGUGg -3'
miRNA:   3'- aCGCUg-CGCG-----UGCGAACaUGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 1196 0.67 0.831333
Target:  5'- gGUGAagGCGCuguaaACGCUUGaGCGGGUGg -3'
miRNA:   3'- aCGCUg-CGCG-----UGCGAACaUGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 1229 0.67 0.831333
Target:  5'- gGUGAagGCGCuacaaACGCUUGaGCGGGUGg -3'
miRNA:   3'- aCGCUg-CGCG-----UGCGAACaUGCUCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.