miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22866 5' -56.1 NC_005137.2 + 26532 0.67 0.8228
Target:  5'- aGUGugGCGCGCGUacggcaaguUUGUuaGCGguAGCGa -3'
miRNA:   3'- aCGCugCGCGUGCG---------AACA--UGC--UCGCa -5'
22866 5' -56.1 NC_005137.2 + 112401 0.67 0.821937
Target:  5'- cGCGAuCGCGCACggcgcgccauuguGCaaGUACG-GCGUu -3'
miRNA:   3'- aCGCU-GCGCGUG-------------CGaaCAUGCuCGCA- -5'
22866 5' -56.1 NC_005137.2 + 91713 0.67 0.821937
Target:  5'- -aCGACGCacuuuuuGCGCGCgacgUGUACGccAGCGa -3'
miRNA:   3'- acGCUGCG-------CGUGCGa---ACAUGC--UCGCa -5'
22866 5' -56.1 NC_005137.2 + 84894 0.67 0.80521
Target:  5'- gGUGACGCGUgguccACGCUcGUGCGuguuGCa- -3'
miRNA:   3'- aCGCUGCGCG-----UGCGAaCAUGCu---CGca -5'
22866 5' -56.1 NC_005137.2 + 125033 0.67 0.80521
Target:  5'- gGCGugGCGCAgGCaacGgagcCGGGCGg -3'
miRNA:   3'- aCGCugCGCGUgCGaa-Cau--GCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 11306 0.67 0.80521
Target:  5'- cGgGAUGCGUACGUgcuaagcugUGUGCGcGCGc -3'
miRNA:   3'- aCgCUGCGCGUGCGa--------ACAUGCuCGCa -5'
22866 5' -56.1 NC_005137.2 + 56104 0.67 0.804314
Target:  5'- uUGUGACGCGCACGUUUcaauuuuuuaacaGUuuGuGCGa -3'
miRNA:   3'- -ACGCUGCGCGUGCGAA-------------CAugCuCGCa -5'
22866 5' -56.1 NC_005137.2 + 98004 0.68 0.790675
Target:  5'- gUGCGcccgccaaguggccaGCGUGCACGUcgGgcgcUGCGAGCGg -3'
miRNA:   3'- -ACGC---------------UGCGCGUGCGaaC----AUGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 84942 0.68 0.786981
Target:  5'- aGCG--GCGCACGCU-GUGC-AGCGg -3'
miRNA:   3'- aCGCugCGCGUGCGAaCAUGcUCGCa -5'
22866 5' -56.1 NC_005137.2 + 67703 0.68 0.768182
Target:  5'- aGUGAgG-GCGCGCgUUGUgcccGCGAGCGa -3'
miRNA:   3'- aCGCUgCgCGUGCG-AACA----UGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 20341 0.68 0.768182
Target:  5'- gGCucCGCGCACGCccGUcACGGGCa- -3'
miRNA:   3'- aCGcuGCGCGUGCGaaCA-UGCUCGca -5'
22866 5' -56.1 NC_005137.2 + 20969 0.68 0.758592
Target:  5'- cUGCGGCGCGCguuuugccGCGCUUGcacgcaaACGGGUu- -3'
miRNA:   3'- -ACGCUGCGCG--------UGCGAACa------UGCUCGca -5'
22866 5' -56.1 NC_005137.2 + 3860 0.68 0.758592
Target:  5'- gGCGAuUGCGCugGCUUucaUACgGAGUGUa -3'
miRNA:   3'- aCGCU-GCGCGugCGAAc--AUG-CUCGCA- -5'
22866 5' -56.1 NC_005137.2 + 110645 0.68 0.757626
Target:  5'- cGcCGACgGCGuUugGCUUGUgcccgugACGGGCGUg -3'
miRNA:   3'- aC-GCUG-CGC-GugCGAACA-------UGCUCGCA- -5'
22866 5' -56.1 NC_005137.2 + 100048 0.68 0.748888
Target:  5'- cGCGGCGCGCGgCGCguucagcaugcuUUGUGCcgcGGCGc -3'
miRNA:   3'- aCGCUGCGCGU-GCG------------AACAUGc--UCGCa -5'
22866 5' -56.1 NC_005137.2 + 42203 0.68 0.748888
Target:  5'- gGaCGGCGaCGCGCGCUacaACGAGUGg -3'
miRNA:   3'- aC-GCUGC-GCGUGCGAacaUGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 113691 0.69 0.739079
Target:  5'- cUGCGACGCGCACGUcgcacaGcGCGUc -3'
miRNA:   3'- -ACGCUGCGCGUGCGaacaugCuCGCA- -5'
22866 5' -56.1 NC_005137.2 + 26669 0.69 0.739079
Target:  5'- -aCGACGaCGCACGCacGUGCGAaCGUu -3'
miRNA:   3'- acGCUGC-GCGUGCGaaCAUGCUcGCA- -5'
22866 5' -56.1 NC_005137.2 + 116850 0.69 0.739079
Target:  5'- --gGACGCGUACGUggaUugGAGCGg -3'
miRNA:   3'- acgCUGCGCGUGCGaacAugCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 23 0.69 0.738093
Target:  5'- aGCGGCGCGUcagGCGCaaacuccuucacuUUGaacACGAGCGa -3'
miRNA:   3'- aCGCUGCGCG---UGCG-------------AACa--UGCUCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.