miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22870 3' -49.5 NC_005137.2 + 35374 0.66 0.994976
Target:  5'- -cACGGCGCAcGCGGaaaaaaCGAcucguuaaacAGCACGUCg -3'
miRNA:   3'- uuUGCUGUGU-CGUUg-----GUU----------UCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 97906 0.66 0.994976
Target:  5'- -uGCGACAcCAGC-ACCAccuugucguuGGGCGUGUCa -3'
miRNA:   3'- uuUGCUGU-GUCGuUGGU----------UUCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 75157 0.66 0.994976
Target:  5'- cAAACGAaACGGCAAgCAacGAGC-CGUUg -3'
miRNA:   3'- -UUUGCUgUGUCGUUgGU--UUCGuGCAG- -5'
22870 3' -49.5 NC_005137.2 + 50979 0.66 0.994976
Target:  5'- --uCGGCAacaAGCAAUCuu-GCACGUUg -3'
miRNA:   3'- uuuGCUGUg--UCGUUGGuuuCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 67364 0.66 0.994896
Target:  5'- -cGCGACGCGaugcGCGACCGucGCcgcggcgGCGUUg -3'
miRNA:   3'- uuUGCUGUGU----CGUUGGUuuCG-------UGCAG- -5'
22870 3' -49.5 NC_005137.2 + 81315 0.66 0.994128
Target:  5'- cAAGCGGCGCguAGUuACCGccGCGCGcCa -3'
miRNA:   3'- -UUUGCUGUG--UCGuUGGUuuCGUGCaG- -5'
22870 3' -49.5 NC_005137.2 + 9681 0.66 0.994037
Target:  5'- -uGCGACAuguacuguuccacCAGCAACCuguuGC-CGUCu -3'
miRNA:   3'- uuUGCUGU-------------GUCGUUGGuuu-CGuGCAG- -5'
22870 3' -49.5 NC_005137.2 + 40439 0.66 0.993167
Target:  5'- uGACGACuACGGCGccguaacaaGCCAAAGUgacgGCGaUCg -3'
miRNA:   3'- uUUGCUG-UGUCGU---------UGGUUUCG----UGC-AG- -5'
22870 3' -49.5 NC_005137.2 + 15863 0.66 0.993167
Target:  5'- uAAACGACAguGCcGCCGGu-CACGUg -3'
miRNA:   3'- -UUUGCUGUguCGuUGGUUucGUGCAg -5'
22870 3' -49.5 NC_005137.2 + 121508 0.66 0.993167
Target:  5'- cAAGCGGCgGCAGCcccGCCGuuGAGCACa-- -3'
miRNA:   3'- -UUUGCUG-UGUCGu--UGGU--UUCGUGcag -5'
22870 3' -49.5 NC_005137.2 + 125055 0.66 0.992085
Target:  5'- cGGGCGGCGCGGC-GCCGGaucugaacGGCGCa-- -3'
miRNA:   3'- -UUUGCUGUGUCGuUGGUU--------UCGUGcag -5'
22870 3' -49.5 NC_005137.2 + 37475 0.66 0.992085
Target:  5'- -cACGACGCAGUuuucGGCCGAcGCGugcauuugcgcCGUCg -3'
miRNA:   3'- uuUGCUGUGUCG----UUGGUUuCGU-----------GCAG- -5'
22870 3' -49.5 NC_005137.2 + 109774 0.66 0.992085
Target:  5'- ---gGugACAGCGGCCc--GCAgCGUCg -3'
miRNA:   3'- uuugCugUGUCGUUGGuuuCGU-GCAG- -5'
22870 3' -49.5 NC_005137.2 + 73585 0.66 0.992085
Target:  5'- cGACGACgGCuuuGCAGCCGgcGCAacgaaGUCg -3'
miRNA:   3'- uUUGCUG-UGu--CGUUGGUuuCGUg----CAG- -5'
22870 3' -49.5 NC_005137.2 + 19070 0.66 0.992085
Target:  5'- aAAACGcucacCACGGCGGCCAAAGCu---- -3'
miRNA:   3'- -UUUGCu----GUGUCGUUGGUUUCGugcag -5'
22870 3' -49.5 NC_005137.2 + 85495 0.66 0.990743
Target:  5'- uGACG-CACAGCGuguagugACCGcaGGGCACGg- -3'
miRNA:   3'- uUUGCuGUGUCGU-------UGGU--UUCGUGCag -5'
22870 3' -49.5 NC_005137.2 + 103978 0.67 0.989516
Target:  5'- -cGCG-UGCAGCAGCuCAAgguucaugcgcAGCAUGUCg -3'
miRNA:   3'- uuUGCuGUGUCGUUG-GUU-----------UCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 11619 0.67 0.989372
Target:  5'- uGGACGACuggAUAGC-ACCGAgcucggcGGCGCGUUu -3'
miRNA:   3'- -UUUGCUG---UGUCGuUGGUU-------UCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 56353 0.67 0.98908
Target:  5'- cGACGACGCGGUAACCcGucgaccgcgauguuGGCGCa-- -3'
miRNA:   3'- uUUGCUGUGUCGUUGGuU--------------UCGUGcag -5'
22870 3' -49.5 NC_005137.2 + 3530 0.67 0.988008
Target:  5'- uGAACuGCugAGUGGCC--GGCACGUUg -3'
miRNA:   3'- -UUUGcUGugUCGUUGGuuUCGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.