miRNA display CGI


Results 41 - 60 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22871 3' -58 NC_005137.2 + 9225 0.7 0.513135
Target:  5'- --gUAGCGCAACaaguGCCGCCG-GCACAc -3'
miRNA:   3'- cguGUCGUGUUG----CGGCGGCgCGUGUu -5'
22871 3' -58 NC_005137.2 + 99358 0.7 0.513135
Target:  5'- uGCACAGCGuggucGCGuCCGCgCGCGUGCAc -3'
miRNA:   3'- -CGUGUCGUgu---UGC-GGCG-GCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 66472 0.7 0.523035
Target:  5'- cGCACGuuGguCAACGuuGCCgguGCGCACAc -3'
miRNA:   3'- -CGUGU--CguGUUGCggCGG---CGCGUGUu -5'
22871 3' -58 NC_005137.2 + 121510 0.7 0.523035
Target:  5'- -aGCGGCgGCAGCcCCGCCGUugaGCACAAa -3'
miRNA:   3'- cgUGUCG-UGUUGcGGCGGCG---CGUGUU- -5'
22871 3' -58 NC_005137.2 + 74485 0.7 0.527015
Target:  5'- uGUACGGCGCGuuugcggccaacguaACGCCGUacaCGCGaCACGAc -3'
miRNA:   3'- -CGUGUCGUGU---------------UGCGGCG---GCGC-GUGUU- -5'
22871 3' -58 NC_005137.2 + 69955 0.7 0.552134
Target:  5'- -uGCAGCGCAaacGCGuacgauuacaagaCCGCCGCGCAa-- -3'
miRNA:   3'- cgUGUCGUGU---UGC-------------GGCGGCGCGUguu -5'
22871 3' -58 NC_005137.2 + 73668 0.7 0.553147
Target:  5'- gGCugAGaCGCGAauUGCCGUCGCGCcCAu -3'
miRNA:   3'- -CGugUC-GUGUU--GCGGCGGCGCGuGUu -5'
22871 3' -58 NC_005137.2 + 63008 0.7 0.553147
Target:  5'- cCAUGGUGCGGCGCCGgCGUGUcgGCAAg -3'
miRNA:   3'- cGUGUCGUGUUGCGGCgGCGCG--UGUU- -5'
22871 3' -58 NC_005137.2 + 57422 0.69 0.563303
Target:  5'- uGCGcCGGCuGCAAagcCGUCGUCGCGUACGAa -3'
miRNA:   3'- -CGU-GUCG-UGUU---GCGGCGGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 106710 0.69 0.563303
Target:  5'- cCGCAGcCGCaAACGCCGCCGUuugauuGCGCc- -3'
miRNA:   3'- cGUGUC-GUG-UUGCGGCGGCG------CGUGuu -5'
22871 3' -58 NC_005137.2 + 130863 0.69 0.563303
Target:  5'- cGCGCAGC-CcGCGCCugaauuguacGCCGCGgACGc -3'
miRNA:   3'- -CGUGUCGuGuUGCGG----------CGGCGCgUGUu -5'
22871 3' -58 NC_005137.2 + 89527 0.69 0.563303
Target:  5'- cGCAauUAGguCAACGuCCGCUGCGgACAGc -3'
miRNA:   3'- -CGU--GUCguGUUGC-GGCGGCGCgUGUU- -5'
22871 3' -58 NC_005137.2 + 125953 0.69 0.573508
Target:  5'- gGCGCAcGCACGACGUcuCGuUUGCGUACGAg -3'
miRNA:   3'- -CGUGU-CGUGUUGCG--GC-GGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 6988 0.69 0.573508
Target:  5'- cGCACAcGgACgAGCgGUCGCCGgGCACAAc -3'
miRNA:   3'- -CGUGU-CgUG-UUG-CGGCGGCgCGUGUU- -5'
22871 3' -58 NC_005137.2 + 125055 0.69 0.583756
Target:  5'- cGgGCGGCGCGGCGCCGgauCUGaacgGCGCAAa -3'
miRNA:   3'- -CgUGUCGUGUUGCGGC---GGCg---CGUGUU- -5'
22871 3' -58 NC_005137.2 + 18544 0.69 0.583756
Target:  5'- aCACGGCGCcGucgcccauccUGCCGCCGCGUcCAAc -3'
miRNA:   3'- cGUGUCGUGuU----------GCGGCGGCGCGuGUU- -5'
22871 3' -58 NC_005137.2 + 74335 0.69 0.594039
Target:  5'- uCACGucCACAGCGCCGUCGgcaaGCACGAg -3'
miRNA:   3'- cGUGUc-GUGUUGCGGCGGCg---CGUGUU- -5'
22871 3' -58 NC_005137.2 + 75584 0.69 0.594039
Target:  5'- -gGCGGaCGCgGGCGgCGCCGUGCGCGu -3'
miRNA:   3'- cgUGUC-GUG-UUGCgGCGGCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 88490 0.69 0.594039
Target:  5'- cGCGCaauuGGaCGgAAUGUCGCCGCGCAgCAAg -3'
miRNA:   3'- -CGUG----UC-GUgUUGCGGCGGCGCGU-GUU- -5'
22871 3' -58 NC_005137.2 + 94465 0.69 0.604351
Target:  5'- gGCAaaauGGUggucaACGAUGCCGUCGUGCACGu -3'
miRNA:   3'- -CGUg---UCG-----UGUUGCGGCGGCGCGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.