Results 41 - 60 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22871 | 3' | -58 | NC_005137.2 | + | 82670 | 0.67 | 0.727388 |
Target: 5'- uGCAgAuacGCACGugcCGCCaagGCCGUGCGCGAc -3' miRNA: 3'- -CGUgU---CGUGUu--GCGG---CGGCGCGUGUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 70862 | 0.67 | 0.717376 |
Target: 5'- cGCGCAuGguCA-UGCUGCCGCGUgACAAa -3' miRNA: 3'- -CGUGU-CguGUuGCGGCGGCGCG-UGUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 124962 | 0.67 | 0.717376 |
Target: 5'- aCGCGGCGCcggugauggGGCGCugCGCUGCGUugGAa -3' miRNA: 3'- cGUGUCGUG---------UUGCG--GCGGCGCGugUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 34863 | 0.67 | 0.717376 |
Target: 5'- cGCACGGCggGCAACGCga-UGCGCAUGGg -3' miRNA: 3'- -CGUGUCG--UGUUGCGgcgGCGCGUGUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 98368 | 0.67 | 0.717376 |
Target: 5'- uGCGcCGGUuuGGCGCCGUCGCG-ACGGg -3' miRNA: 3'- -CGU-GUCGugUUGCGGCGGCGCgUGUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 11266 | 0.67 | 0.707291 |
Target: 5'- -aGCGGCGCuGACGuCCGCuaCGCGCugAc -3' miRNA: 3'- cgUGUCGUG-UUGC-GGCG--GCGCGugUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 85327 | 0.67 | 0.707291 |
Target: 5'- aGCAUc-CGCGuugGCGCCGCCGCcCACGu -3' miRNA: 3'- -CGUGucGUGU---UGCGGCGGCGcGUGUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 54652 | 0.67 | 0.707291 |
Target: 5'- uCGCGGCGCAAuaauaaacaguCGCuCGgUGCGCGCGGg -3' miRNA: 3'- cGUGUCGUGUU-----------GCG-GCgGCGCGUGUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 102955 | 0.67 | 0.707291 |
Target: 5'- gGCGCAuCcCAGCGCgCGUCGCGcCACGu -3' miRNA: 3'- -CGUGUcGuGUUGCG-GCGGCGC-GUGUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 126 | 0.67 | 0.69714 |
Target: 5'- -uGCGGCGCGu--CCGCgGCGUACAAu -3' miRNA: 3'- cgUGUCGUGUugcGGCGgCGCGUGUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 65421 | 0.67 | 0.69714 |
Target: 5'- -aGCGGCACccAAUGCCGuugcCCGUGUACAc -3' miRNA: 3'- cgUGUCGUG--UUGCGGC----GGCGCGUGUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 106853 | 0.67 | 0.69714 |
Target: 5'- aCGCAGUAC-GCGCagauugugGCCGCGUugGAa -3' miRNA: 3'- cGUGUCGUGuUGCGg-------CGGCGCGugUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 72121 | 0.67 | 0.69714 |
Target: 5'- uUACGGCGuacguucgccUAACGCUGCCG-GCACGu -3' miRNA: 3'- cGUGUCGU----------GUUGCGGCGGCgCGUGUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 110433 | 0.67 | 0.686933 |
Target: 5'- gGCGCGacggugagcguGCACAccGCgGCCGgCGCGUACAc -3' miRNA: 3'- -CGUGU-----------CGUGU--UG-CGGCgGCGCGUGUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 25286 | 0.67 | 0.686933 |
Target: 5'- aCACAGUGCGggauccauACGCUGUCGCuGUACAu -3' miRNA: 3'- cGUGUCGUGU--------UGCGGCGGCG-CGUGUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 9745 | 0.67 | 0.686933 |
Target: 5'- uGCACcuGCACuuguUGCCGCauguugagauugUGCGCACAAg -3' miRNA: 3'- -CGUGu-CGUGuu--GCGGCG------------GCGCGUGUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 17300 | 0.67 | 0.686933 |
Target: 5'- uGCGCAGgACAuugacGCGCUGUgcgaCGUGCGCGu -3' miRNA: 3'- -CGUGUCgUGU-----UGCGGCG----GCGCGUGUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 28179 | 0.67 | 0.686933 |
Target: 5'- cGCAauaaGGCgACAGCGUCGC-GUGUACAAa -3' miRNA: 3'- -CGUg---UCG-UGUUGCGGCGgCGCGUGUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 9602 | 0.67 | 0.68591 |
Target: 5'- aGC-CAGCauGCAGCGUCGCuugcaagCGUGCACGc -3' miRNA: 3'- -CGuGUCG--UGUUGCGGCG-------GCGCGUGUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 49612 | 0.67 | 0.682837 |
Target: 5'- -aGCAGCACGuacggaaugcgguCGCCGuuGCccgGCACAAa -3' miRNA: 3'- cgUGUCGUGUu------------GCGGCggCG---CGUGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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