miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22871 3' -58 NC_005137.2 + 98791 0.66 0.766497
Target:  5'- uGCcaaGGC-CAuucgucugccaaACGCCGCCGUGCGCc- -3'
miRNA:   3'- -CGug-UCGuGU------------UGCGGCGGCGCGUGuu -5'
22871 3' -58 NC_005137.2 + 80256 0.66 0.766497
Target:  5'- -gACGGCGCgAACGCCGUgGCGgAgGu -3'
miRNA:   3'- cgUGUCGUG-UUGCGGCGgCGCgUgUu -5'
22871 3' -58 NC_005137.2 + 50166 0.66 0.766497
Target:  5'- -gGCAGCACAAacgucgaguccgUGUCGCCGUagaGCACu- -3'
miRNA:   3'- cgUGUCGUGUU------------GCGGCGGCG---CGUGuu -5'
22871 3' -58 NC_005137.2 + 20970 0.66 0.756879
Target:  5'- -uGCGGCGC-GCGUuuUGCCGCGCuuGCAc -3'
miRNA:   3'- cgUGUCGUGuUGCG--GCGGCGCG--UGUu -5'
22871 3' -58 NC_005137.2 + 20843 0.66 0.756879
Target:  5'- aCAUuaGGCGCAACGuuGCagcgGUGCACGc -3'
miRNA:   3'- cGUG--UCGUGUUGCggCGg---CGCGUGUu -5'
22871 3' -58 NC_005137.2 + 95160 0.66 0.756879
Target:  5'- cGCGCAcgaaugccaccGCACAuUGaCGCCGUGCACu- -3'
miRNA:   3'- -CGUGU-----------CGUGUuGCgGCGGCGCGUGuu -5'
22871 3' -58 NC_005137.2 + 41319 0.66 0.747149
Target:  5'- uGCACGaauGCAaAACGCUGCUGgaGCACAc -3'
miRNA:   3'- -CGUGU---CGUgUUGCGGCGGCg-CGUGUu -5'
22871 3' -58 NC_005137.2 + 69001 0.66 0.747149
Target:  5'- -uGCAGCuugGCAGCGaCGCCauucugGCGCGCAu -3'
miRNA:   3'- cgUGUCG---UGUUGCgGCGG------CGCGUGUu -5'
22871 3' -58 NC_005137.2 + 108150 0.66 0.747149
Target:  5'- cGgGCGGCgGCGGCGUCGguaUGCGCGCGc -3'
miRNA:   3'- -CgUGUCG-UGUUGCGGCg--GCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 65773 0.66 0.747149
Target:  5'- aCACGuuuauGUGCAACGCCGaaGCGgACAAa -3'
miRNA:   3'- cGUGU-----CGUGUUGCGGCggCGCgUGUU- -5'
22871 3' -58 NC_005137.2 + 31206 0.66 0.747149
Target:  5'- cGUACAcGCGCGGCGaCC-UCGUGUACAGa -3'
miRNA:   3'- -CGUGU-CGUGUUGC-GGcGGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 114384 0.66 0.74617
Target:  5'- -uGCGGCuaaaacuuuuccGCGAUuagucgaGCCGCCGCGCAuCAAu -3'
miRNA:   3'- cgUGUCG------------UGUUG-------CGGCGGCGCGU-GUU- -5'
22871 3' -58 NC_005137.2 + 74134 0.66 0.737315
Target:  5'- gGCACGGCACGG-GuuGCauuuaaaauUGUGCACAAu -3'
miRNA:   3'- -CGUGUCGUGUUgCggCG---------GCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 109510 0.66 0.736327
Target:  5'- uGCACAaauauauGCACAA-GUCGCUGCGUGCc- -3'
miRNA:   3'- -CGUGU-------CGUGUUgCGGCGGCGCGUGuu -5'
22871 3' -58 NC_005137.2 + 67362 0.66 0.736327
Target:  5'- gGCGCGacgcgauGCGCGAcCGUCGCCGCG-GCGg -3'
miRNA:   3'- -CGUGU-------CGUGUU-GCGGCGGCGCgUGUu -5'
22871 3' -58 NC_005137.2 + 42496 0.67 0.727388
Target:  5'- aCGCA-CACGGCGCuUGCUGCGCGgCGAc -3'
miRNA:   3'- cGUGUcGUGUUGCG-GCGGCGCGU-GUU- -5'
22871 3' -58 NC_005137.2 + 9501 0.67 0.727388
Target:  5'- -aACGGCGgGGCuGCCGCCGCuuguCACGu -3'
miRNA:   3'- cgUGUCGUgUUG-CGGCGGCGc---GUGUu -5'
22871 3' -58 NC_005137.2 + 54723 0.67 0.727388
Target:  5'- cGUACAGCA--ACGUguugucaaaGUCGCGCACGAa -3'
miRNA:   3'- -CGUGUCGUguUGCGg--------CGGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 82670 0.67 0.727388
Target:  5'- uGCAgAuacGCACGugcCGCCaagGCCGUGCGCGAc -3'
miRNA:   3'- -CGUgU---CGUGUu--GCGG---CGGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 7154 0.67 0.727388
Target:  5'- ----uGCGCGGCGUguaaGCCGCGCGCu- -3'
miRNA:   3'- cguguCGUGUUGCGg---CGGCGCGUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.