miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22872 5' -49.5 NC_005137.2 + 56681 0.68 0.988253
Target:  5'- --gGCGCUGUGGACGUgaccgGACGCGAa-- -3'
miRNA:   3'- cagCGUGGCAUUUGCG-----UUGCGUUagc -5'
22872 5' -49.5 NC_005137.2 + 35381 0.69 0.967084
Target:  5'- -cCGCugUGgacaauGACGCGACGCAuuuggaAUCGg -3'
miRNA:   3'- caGCGugGCau----UUGCGUUGCGU------UAGC- -5'
22872 5' -49.5 NC_005137.2 + 48749 0.69 0.973214
Target:  5'- cUUGuCGCCGaacAAgGCGGCGCGAUCGu -3'
miRNA:   3'- cAGC-GUGGCau-UUgCGUUGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 57442 0.69 0.975684
Target:  5'- cGUCGCGuacgaauCgGUGGACGCcGCGCAA-CGa -3'
miRNA:   3'- -CAGCGU-------GgCAUUUGCGuUGCGUUaGC- -5'
22872 5' -49.5 NC_005137.2 + 35099 0.69 0.978472
Target:  5'- -aCGCgGCUGUuuGGCGCaAACGCGGUCa -3'
miRNA:   3'- caGCG-UGGCAu-UUGCG-UUGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 33200 0.69 0.978472
Target:  5'- aUUGCG-CGUcgaaGAGCGCAcCGCGGUCGa -3'
miRNA:   3'- cAGCGUgGCA----UUUGCGUuGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 56574 0.68 0.980794
Target:  5'- uUUGCGCCGUuaugGGACcCGACGCGA-CGg -3'
miRNA:   3'- cAGCGUGGCA----UUUGcGUUGCGUUaGC- -5'
22872 5' -49.5 NC_005137.2 + 87969 0.68 0.984871
Target:  5'- gGUCGCcguCCGUGggcGACGCGugGUug-CGg -3'
miRNA:   3'- -CAGCGu--GGCAU---UUGCGUugCGuuaGC- -5'
22872 5' -49.5 NC_005137.2 + 21196 0.68 0.986644
Target:  5'- uUUGCGCaCGUGGAUGCuuCGCAGa-- -3'
miRNA:   3'- cAGCGUG-GCAUUUGCGuuGCGUUagc -5'
22872 5' -49.5 NC_005137.2 + 95604 0.7 0.960024
Target:  5'- -gCGCACUGU--GCGCGACGUgcuguuuaacgAGUCGu -3'
miRNA:   3'- caGCGUGGCAuuUGCGUUGCG-----------UUAGC- -5'
22872 5' -49.5 NC_005137.2 + 107935 0.7 0.958495
Target:  5'- -aCGCGCCGUGuACGCcaaguacAaauuugucacguauGCGCGAUCGg -3'
miRNA:   3'- caGCGUGGCAUuUGCG-------U--------------UGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 43595 0.7 0.956128
Target:  5'- cUCGCGCUGUAcguguacgaaAACGCAucCGUAAUUGu -3'
miRNA:   3'- cAGCGUGGCAU----------UUGCGUu-GCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 56535 0.75 0.78719
Target:  5'- -aCGCGCCGUAcaAACGCAcgguGCGCAAcCa -3'
miRNA:   3'- caGCGUGGCAU--UUGCGU----UGCGUUaGc -5'
22872 5' -49.5 NC_005137.2 + 128740 0.73 0.881129
Target:  5'- uGUCGCGuuuacacagcCCGUAAuCGCAaagguaaACGCGAUCGc -3'
miRNA:   3'- -CAGCGU----------GGCAUUuGCGU-------UGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 5249 0.72 0.915673
Target:  5'- -aCGCGCCGcucgAAACGCGcgGCGCAAgcCGg -3'
miRNA:   3'- caGCGUGGCa---UUUGCGU--UGCGUUa-GC- -5'
22872 5' -49.5 NC_005137.2 + 86880 0.72 0.915673
Target:  5'- aUCGCACCGU---UGCggUGCGAUUa -3'
miRNA:   3'- cAGCGUGGCAuuuGCGuuGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 93550 0.7 0.947581
Target:  5'- cGUCGUGuCCaaguuUAAACGCAACGCGccGUCGu -3'
miRNA:   3'- -CAGCGU-GGc----AUUUGCGUUGCGU--UAGC- -5'
22872 5' -49.5 NC_005137.2 + 4458 0.7 0.951982
Target:  5'- uUCGCGCCGUcguaauAACGUAACGUguuuguuaAAUCa -3'
miRNA:   3'- cAGCGUGGCAu-----UUGCGUUGCG--------UUAGc -5'
22872 5' -49.5 NC_005137.2 + 11493 0.7 0.956128
Target:  5'- aGUCGaGCCGUGuuuuuUGCAguuGCGCAAUCa -3'
miRNA:   3'- -CAGCgUGGCAUuu---GCGU---UGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 7175 0.7 0.956128
Target:  5'- aUCGCGCgCGU---UGCAGCGCAuuUCGa -3'
miRNA:   3'- cAGCGUG-GCAuuuGCGUUGCGUu-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.