Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 88818 | 0.66 | 0.997414 |
Target: 5'- cGUCGCGuccCUGUcggcGGACGCGACGCu---- -3' miRNA: 3'- -CAGCGU---GGCA----UUUGCGUUGCGuuagc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 30755 | 0.67 | 0.989707 |
Target: 5'- -gCGCGcCCGUGcguUGCGGCGCccgGAUCGg -3' miRNA: 3'- caGCGU-GGCAUuu-GCGUUGCG---UUAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 113944 | 0.68 | 0.988253 |
Target: 5'- --gGCACCGU---CGCGAUGCGAUa- -3' miRNA: 3'- cagCGUGGCAuuuGCGUUGCGUUAgc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 97121 | 1.09 | 0.010558 |
Target: 5'- cGUCGCACCGUAAACGCAACGCAAUCGc -3' miRNA: 3'- -CAGCGUGGCAUUUGCGUUGCGUUAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 68170 | 0.66 | 0.997414 |
Target: 5'- uUCGCACCGacAAACaaCAAUGCAAUUu -3' miRNA: 3'- cAGCGUGGCa-UUUGc-GUUGCGUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 61737 | 0.66 | 0.996928 |
Target: 5'- -aCGCGCCGcGAccGCGC-ACGCcGUCc -3' miRNA: 3'- caGCGUGGCaUU--UGCGuUGCGuUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 52833 | 0.66 | 0.996369 |
Target: 5'- gGUCGUGuuGcUAAacaagcGCGUGACGCAAUCu -3' miRNA: 3'- -CAGCGUggC-AUU------UGCGUUGCGUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 55032 | 0.66 | 0.99573 |
Target: 5'- -gUGCGCCGUGcAC-CAACGCGcgCc -3' miRNA: 3'- caGCGUGGCAUuUGcGUUGCGUuaGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 82686 | 0.66 | 0.994923 |
Target: 5'- -cCGCcaagGCCGU--GCGCGaccagcuGCGCAAUCa -3' miRNA: 3'- caGCG----UGGCAuuUGCGU-------UGCGUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 34650 | 0.67 | 0.989707 |
Target: 5'- cGUCGCGgCGUAAgcACGCAccACG-AGUUGg -3' miRNA: 3'- -CAGCGUgGCAUU--UGCGU--UGCgUUAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 125754 | 0.67 | 0.994174 |
Target: 5'- cUUGCGCCGcGcguuucgagcGGCGCGugGCAAUUu -3' miRNA: 3'- cAGCGUGGCaU----------UUGCGUugCGUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 118645 | 0.66 | 0.995304 |
Target: 5'- -cCGCACCGUGcuauggaagguggacGACGCuGugGCAaaGUCc -3' miRNA: 3'- caGCGUGGCAU---------------UUGCG-UugCGU--UAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 78934 | 0.66 | 0.997414 |
Target: 5'- -aUGUACCGU--GCGaCAACGCGuuUCGc -3' miRNA: 3'- caGCGUGGCAuuUGC-GUUGCGUu-AGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 92914 | 0.67 | 0.993241 |
Target: 5'- cGUUGC-CCGUGGGCuugucCGugGCGGUCa -3' miRNA: 3'- -CAGCGuGGCAUUUGc----GUugCGUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 129380 | 0.66 | 0.997414 |
Target: 5'- uUUGCAUCGcagUAAACGCAACGU--UUGu -3' miRNA: 3'- cAGCGUGGC---AUUUGCGUUGCGuuAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 34574 | 0.66 | 0.99573 |
Target: 5'- -cCGCGCa---AACGCAACGCGG-CGg -3' miRNA: 3'- caGCGUGgcauUUGCGUUGCGUUaGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 112742 | 0.67 | 0.989707 |
Target: 5'- -aCGUGuCCGUGuuaacgGACGCGGCGCcgcAGUCGa -3' miRNA: 3'- caGCGU-GGCAU------UUGCGUUGCG---UUAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 11450 | 0.68 | 0.988253 |
Target: 5'- cGUCGCucuACCG-AGGCuaAACGCAcUCGa -3' miRNA: 3'- -CAGCG---UGGCaUUUGcgUUGCGUuAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 44130 | 0.66 | 0.997414 |
Target: 5'- aUCGCACCGcaacggUGCGAuCGCAAUUc -3' miRNA: 3'- cAGCGUGGCauuu--GCGUU-GCGUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 99327 | 0.66 | 0.996369 |
Target: 5'- -cCGCACaacc-ACGCGGCGguGUCGu -3' miRNA: 3'- caGCGUGgcauuUGCGUUGCguUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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