miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22872 5' -49.5 NC_005137.2 + 1852 0.69 0.978229
Target:  5'- -gUGCACCGUcguCGCGGCGCcucaaguGAUCa -3'
miRNA:   3'- caGCGUGGCAuuuGCGUUGCG-------UUAGc -5'
22872 5' -49.5 NC_005137.2 + 4458 0.7 0.951982
Target:  5'- uUCGCGCCGUcguaauAACGUAACGUguuuguuaAAUCa -3'
miRNA:   3'- cAGCGUGGCAu-----UUGCGUUGCG--------UUAGc -5'
22872 5' -49.5 NC_005137.2 + 5249 0.72 0.915673
Target:  5'- -aCGCGCCGcucgAAACGCGcgGCGCAAgcCGg -3'
miRNA:   3'- caGCGUGGCa---UUUGCGU--UGCGUUa-GC- -5'
22872 5' -49.5 NC_005137.2 + 7175 0.7 0.956128
Target:  5'- aUCGCGCgCGU---UGCAGCGCAuuUCGa -3'
miRNA:   3'- cAGCGUG-GCAuuuGCGUUGCGUu-AGC- -5'
22872 5' -49.5 NC_005137.2 + 11450 0.68 0.988253
Target:  5'- cGUCGCucuACCG-AGGCuaAACGCAcUCGa -3'
miRNA:   3'- -CAGCG---UGGCaUUUGcgUUGCGUuAGC- -5'
22872 5' -49.5 NC_005137.2 + 11493 0.7 0.956128
Target:  5'- aGUCGaGCCGUGuuuuuUGCAguuGCGCAAUCa -3'
miRNA:   3'- -CAGCgUGGCAUuu---GCGU---UGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 13151 0.66 0.996124
Target:  5'- -cCGCAgCGUuguuuguuugcCGCAGCGUAGUCa -3'
miRNA:   3'- caGCGUgGCAuuu--------GCGUUGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 14504 0.74 0.806167
Target:  5'- cGUUGCAUCGUcaaGAACGCGAaaguUGCAGUCu -3'
miRNA:   3'- -CAGCGUGGCA---UUUGCGUU----GCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 18611 0.79 0.566642
Target:  5'- -gCGCGCCGU--GCGCGaucGCGCAAUCa -3'
miRNA:   3'- caGCGUGGCAuuUGCGU---UGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 20424 0.68 0.980794
Target:  5'- cGUCGCACaggaUGGGCGCGccaagACGCAGgugCGg -3'
miRNA:   3'- -CAGCGUGgc--AUUUGCGU-----UGCGUUa--GC- -5'
22872 5' -49.5 NC_005137.2 + 21196 0.68 0.986644
Target:  5'- uUUGCGCaCGUGGAUGCuuCGCAGa-- -3'
miRNA:   3'- cAGCGUG-GCAUUUGCGuuGCGUUagc -5'
22872 5' -49.5 NC_005137.2 + 22235 0.68 0.980794
Target:  5'- cGUCGCGuuGUAAGCGUGAucgauguuUGCAAaCGa -3'
miRNA:   3'- -CAGCGUggCAUUUGCGUU--------GCGUUaGC- -5'
22872 5' -49.5 NC_005137.2 + 23031 0.72 0.915673
Target:  5'- -gCGCGCgCGUcAACGCGAC-CGAUCGc -3'
miRNA:   3'- caGCGUG-GCAuUUGCGUUGcGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 23363 0.73 0.858604
Target:  5'- uUUGCACUuUAAACGCcgUGCGGUCGg -3'
miRNA:   3'- cAGCGUGGcAUUUGCGuuGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 26654 0.67 0.991017
Target:  5'- cGUCGCAgCGcGAacACGaCGACGCAcgCa -3'
miRNA:   3'- -CAGCGUgGCaUU--UGC-GUUGCGUuaGc -5'
22872 5' -49.5 NC_005137.2 + 27425 0.66 0.997414
Target:  5'- --aGCGCUGUAAcagcuggcccACGCGcuugucucguacGCGCAAUUGa -3'
miRNA:   3'- cagCGUGGCAUU----------UGCGU------------UGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 30436 0.67 0.992192
Target:  5'- uGUCGCACuCGacAACGCGguucugcuGCGCGGcUCGu -3'
miRNA:   3'- -CAGCGUG-GCauUUGCGU--------UGCGUU-AGC- -5'
22872 5' -49.5 NC_005137.2 + 30755 0.67 0.989707
Target:  5'- -gCGCGcCCGUGcguUGCGGCGCccgGAUCGg -3'
miRNA:   3'- caGCGU-GGCAUuu-GCGUUGCG---UUAGC- -5'
22872 5' -49.5 NC_005137.2 + 30940 0.7 0.961513
Target:  5'- -gCGCGCCGcggcacaaagcaugcUGAACGCGccGCGCGccgcGUCGg -3'
miRNA:   3'- caGCGUGGC---------------AUUUGCGU--UGCGU----UAGC- -5'
22872 5' -49.5 NC_005137.2 + 33200 0.69 0.978472
Target:  5'- aUUGCG-CGUcgaaGAGCGCAcCGCGGUCGa -3'
miRNA:   3'- cAGCGUgGCA----UUUGCGUuGCGUUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.