miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22872 5' -49.5 NC_005137.2 + 97121 1.09 0.010558
Target:  5'- cGUCGCACCGUAAACGCAACGCAAUCGc -3'
miRNA:   3'- -CAGCGUGGCAUUUGCGUUGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 18611 0.79 0.566642
Target:  5'- -gCGCGCCGU--GCGCGaucGCGCAAUCa -3'
miRNA:   3'- caGCGUGGCAuuUGCGU---UGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 50765 0.78 0.641776
Target:  5'- uUCGCGCCGUcaucAAACGCAaccGCGCAGcCGu -3'
miRNA:   3'- cAGCGUGGCA----UUUGCGU---UGCGUUaGC- -5'
22872 5' -49.5 NC_005137.2 + 33750 0.75 0.757589
Target:  5'- cGUUGUACCGaAAACGCAugGCcAUUGu -3'
miRNA:   3'- -CAGCGUGGCaUUUGCGUugCGuUAGC- -5'
22872 5' -49.5 NC_005137.2 + 56535 0.75 0.78719
Target:  5'- -aCGCGCCGUAcaAACGCAcgguGCGCAAcCa -3'
miRNA:   3'- caGCGUGGCAU--UUGCGU----UGCGUUaGc -5'
22872 5' -49.5 NC_005137.2 + 14504 0.74 0.806167
Target:  5'- cGUUGCAUCGUcaaGAACGCGAaaguUGCAGUCu -3'
miRNA:   3'- -CAGCGUGGCA---UUUGCGUU----GCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 23363 0.73 0.858604
Target:  5'- uUUGCACUuUAAACGCcgUGCGGUCGg -3'
miRNA:   3'- cAGCGUGGcAUUUGCGuuGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 34534 0.73 0.858604
Target:  5'- -gCGCACCGUGuuGCGUu-CGCGGUCa -3'
miRNA:   3'- caGCGUGGCAUu-UGCGuuGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 125933 0.73 0.874353
Target:  5'- -aCGCGCCGUcucAAuguCGCGGCGCAcgCa -3'
miRNA:   3'- caGCGUGGCA---UUu--GCGUUGCGUuaGc -5'
22872 5' -49.5 NC_005137.2 + 128740 0.73 0.881129
Target:  5'- uGUCGCGuuuacacagcCCGUAAuCGCAaagguaaACGCGAUCGc -3'
miRNA:   3'- -CAGCGU----------GGCAUUuGCGU-------UGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 43689 0.73 0.88187
Target:  5'- -cUGCGCCGUuu-CGCGACGCGcuUCGu -3'
miRNA:   3'- caGCGUGGCAuuuGCGUUGCGUu-AGC- -5'
22872 5' -49.5 NC_005137.2 + 23031 0.72 0.915673
Target:  5'- -gCGCGCgCGUcAACGCGAC-CGAUCGc -3'
miRNA:   3'- caGCGUG-GCAuUUGCGUUGcGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 35360 0.72 0.915673
Target:  5'- cUUGC-CCGUcgGCGCAcgGCGCAcgCGg -3'
miRNA:   3'- cAGCGuGGCAuuUGCGU--UGCGUuaGC- -5'
22872 5' -49.5 NC_005137.2 + 86880 0.72 0.915673
Target:  5'- aUCGCACCGU---UGCggUGCGAUUa -3'
miRNA:   3'- cAGCGUGGCAuuuGCGuuGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 5249 0.72 0.915673
Target:  5'- -aCGCGCCGcucgAAACGCGcgGCGCAAgcCGg -3'
miRNA:   3'- caGCGUGGCa---UUUGCGU--UGCGUUa-GC- -5'
22872 5' -49.5 NC_005137.2 + 109760 0.71 0.927367
Target:  5'- aGUCGCACCGUuuugguGACaGCGGCccGCAgcGUCGc -3'
miRNA:   3'- -CAGCGUGGCAu-----UUG-CGUUG--CGU--UAGC- -5'
22872 5' -49.5 NC_005137.2 + 35480 0.71 0.927367
Target:  5'- cGUCGCAC-----ACGCAGCGCAaGUCGc -3'
miRNA:   3'- -CAGCGUGgcauuUGCGUUGCGU-UAGC- -5'
22872 5' -49.5 NC_005137.2 + 51315 0.71 0.938001
Target:  5'- -gUGCGCCaaguAACGCAGCGgGGUCGu -3'
miRNA:   3'- caGCGUGGcau-UUGCGUUGCgUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 93550 0.7 0.947581
Target:  5'- cGUCGUGuCCaaguuUAAACGCAACGCGccGUCGu -3'
miRNA:   3'- -CAGCGU-GGc----AUUUGCGUUGCGU--UAGC- -5'
22872 5' -49.5 NC_005137.2 + 4458 0.7 0.951982
Target:  5'- uUCGCGCCGUcguaauAACGUAACGUguuuguuaAAUCa -3'
miRNA:   3'- cAGCGUGGCAu-----UUGCGUUGCG--------UUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.