miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22872 5' -49.5 NC_005137.2 + 88818 0.66 0.997414
Target:  5'- cGUCGCGuccCUGUcggcGGACGCGACGCu---- -3'
miRNA:   3'- -CAGCGU---GGCA----UUUGCGUUGCGuuagc -5'
22872 5' -49.5 NC_005137.2 + 107005 0.66 0.997414
Target:  5'- cGUgGUugCGcAAACGCuGCGCAG-CGa -3'
miRNA:   3'- -CAgCGugGCaUUUGCGuUGCGUUaGC- -5'
22872 5' -49.5 NC_005137.2 + 98584 0.66 0.997414
Target:  5'- -aCGCACUGUu-GCGCAccuCGCAAa-- -3'
miRNA:   3'- caGCGUGGCAuuUGCGUu--GCGUUagc -5'
22872 5' -49.5 NC_005137.2 + 27425 0.66 0.997414
Target:  5'- --aGCGCUGUAAcagcuggcccACGCGcuugucucguacGCGCAAUUGa -3'
miRNA:   3'- cagCGUGGCAUU----------UGCGU------------UGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 112443 0.66 0.997414
Target:  5'- aGUCG-GCCGuUGGACGCGGCgGCAGgaugggCGa -3'
miRNA:   3'- -CAGCgUGGC-AUUUGCGUUG-CGUUa-----GC- -5'
22872 5' -49.5 NC_005137.2 + 68170 0.66 0.997414
Target:  5'- uUCGCACCGacAAACaaCAAUGCAAUUu -3'
miRNA:   3'- cAGCGUGGCa-UUUGc-GUUGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 44130 0.66 0.997414
Target:  5'- aUCGCACCGcaacggUGCGAuCGCAAUUc -3'
miRNA:   3'- cAGCGUGGCauuu--GCGUU-GCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 129380 0.66 0.997414
Target:  5'- uUUGCAUCGcagUAAACGCAACGU--UUGu -3'
miRNA:   3'- cAGCGUGGC---AUUUGCGUUGCGuuAGC- -5'
22872 5' -49.5 NC_005137.2 + 78934 0.66 0.997414
Target:  5'- -aUGUACCGU--GCGaCAACGCGuuUCGc -3'
miRNA:   3'- caGCGUGGCAuuUGC-GUUGCGUu-AGC- -5'
22872 5' -49.5 NC_005137.2 + 61737 0.66 0.996928
Target:  5'- -aCGCGCCGcGAccGCGC-ACGCcGUCc -3'
miRNA:   3'- caGCGUGGCaUU--UGCGuUGCGuUAGc -5'
22872 5' -49.5 NC_005137.2 + 93754 0.66 0.996928
Target:  5'- gGUCGCGCUGcAGAaaccCGCuuCGCAAUUc -3'
miRNA:   3'- -CAGCGUGGCaUUU----GCGuuGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 99327 0.66 0.996369
Target:  5'- -cCGCACaacc-ACGCGGCGguGUCGu -3'
miRNA:   3'- caGCGUGgcauuUGCGUUGCguUAGC- -5'
22872 5' -49.5 NC_005137.2 + 52833 0.66 0.996369
Target:  5'- gGUCGUGuuGcUAAacaagcGCGUGACGCAAUCu -3'
miRNA:   3'- -CAGCGUggC-AUU------UGCGUUGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 46685 0.66 0.996369
Target:  5'- -aCGCGCCaGUAugcuCGCAcgcGCGCAA-CGg -3'
miRNA:   3'- caGCGUGG-CAUuu--GCGU---UGCGUUaGC- -5'
22872 5' -49.5 NC_005137.2 + 13151 0.66 0.996124
Target:  5'- -cCGCAgCGUuguuuguuugcCGCAGCGUAGUCa -3'
miRNA:   3'- caGCGUgGCAuuu--------GCGUUGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 108414 0.66 0.99573
Target:  5'- aUCGCgacacgACCGUGGACcaGAUGCGAUUGg -3'
miRNA:   3'- cAGCG------UGGCAUUUGcgUUGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 78615 0.66 0.99573
Target:  5'- -gCGCGCCGgcGACGaAAUGguGUCc -3'
miRNA:   3'- caGCGUGGCauUUGCgUUGCguUAGc -5'
22872 5' -49.5 NC_005137.2 + 55032 0.66 0.99573
Target:  5'- -gUGCGCCGUGcAC-CAACGCGcgCc -3'
miRNA:   3'- caGCGUGGCAUuUGcGUUGCGUuaGc -5'
22872 5' -49.5 NC_005137.2 + 34574 0.66 0.99573
Target:  5'- -cCGCGCa---AACGCAACGCGG-CGg -3'
miRNA:   3'- caGCGUGgcauUUGCGUUGCGUUaGC- -5'
22872 5' -49.5 NC_005137.2 + 49072 0.66 0.995661
Target:  5'- -gCGCACUGcGGGCGCAaaaaacaGCGCAAa-- -3'
miRNA:   3'- caGCGUGGCaUUUGCGU-------UGCGUUagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.