miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22872 5' -49.5 NC_005137.2 + 118645 0.66 0.995304
Target:  5'- -cCGCACCGUGcuauggaagguggacGACGCuGugGCAaaGUCc -3'
miRNA:   3'- caGCGUGGCAU---------------UUGCG-UugCGU--UAGc -5'
22872 5' -49.5 NC_005137.2 + 82686 0.66 0.994923
Target:  5'- -cCGCcaagGCCGU--GCGCGaccagcuGCGCAAUCa -3'
miRNA:   3'- caGCG----UGGCAuuUGCGU-------UGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 66844 0.66 0.994764
Target:  5'- uGUCcgGCGCCGuUAAACGCGcagggugcgcuuccACGCAcGUCa -3'
miRNA:   3'- -CAG--CGUGGC-AUUUGCGU--------------UGCGU-UAGc -5'
22872 5' -49.5 NC_005137.2 + 69906 0.67 0.994174
Target:  5'- aUCGgACCGccaauGCGCcACGCAaccGUCGg -3'
miRNA:   3'- cAGCgUGGCauu--UGCGuUGCGU---UAGC- -5'
22872 5' -49.5 NC_005137.2 + 125013 0.67 0.994174
Target:  5'- -cCGCACCGgcGaucgguugcgGCGUGGCGCAggCa -3'
miRNA:   3'- caGCGUGGCauU----------UGCGUUGCGUuaGc -5'
22872 5' -49.5 NC_005137.2 + 93507 0.67 0.994174
Target:  5'- uGUCGUAgCCGacGGCGCAaAUGCAcgcGUCGg -3'
miRNA:   3'- -CAGCGU-GGCauUUGCGU-UGCGU---UAGC- -5'
22872 5' -49.5 NC_005137.2 + 125754 0.67 0.994174
Target:  5'- cUUGCGCCGcGcguuucgagcGGCGCGugGCAAUUu -3'
miRNA:   3'- cAGCGUGGCaU----------UUGCGUugCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 97329 0.67 0.993241
Target:  5'- cUUGCGCUcaaAGACGCAACGCGcUCc -3'
miRNA:   3'- cAGCGUGGca-UUUGCGUUGCGUuAGc -5'
22872 5' -49.5 NC_005137.2 + 92914 0.67 0.993241
Target:  5'- cGUUGC-CCGUGGGCuugucCGugGCGGUCa -3'
miRNA:   3'- -CAGCGuGGCAUUUGc----GUugCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 56727 0.67 0.993041
Target:  5'- -aCGCGCCucuuaucauGCGCGaaACGCAAUUGg -3'
miRNA:   3'- caGCGUGGcauu-----UGCGU--UGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 30436 0.67 0.992192
Target:  5'- uGUCGCACuCGacAACGCGguucugcuGCGCGGcUCGu -3'
miRNA:   3'- -CAGCGUG-GCauUUGCGU--------UGCGUU-AGC- -5'
22872 5' -49.5 NC_005137.2 + 112018 0.67 0.992192
Target:  5'- -aCGUACCGUGAcgcGCuGCGACGUGcUCa -3'
miRNA:   3'- caGCGUGGCAUU---UG-CGUUGCGUuAGc -5'
22872 5' -49.5 NC_005137.2 + 42185 0.67 0.991017
Target:  5'- cGUCGCguccGCCGacagGGACgGCGACGCGcgCu -3'
miRNA:   3'- -CAGCG----UGGCa---UUUG-CGUUGCGUuaGc -5'
22872 5' -49.5 NC_005137.2 + 41242 0.67 0.991017
Target:  5'- ---aCGCUGgAAACGCgAACGCAAUCGc -3'
miRNA:   3'- cagcGUGGCaUUUGCG-UUGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 26654 0.67 0.991017
Target:  5'- cGUCGCAgCGcGAacACGaCGACGCAcgCa -3'
miRNA:   3'- -CAGCGUgGCaUU--UGC-GUUGCGUuaGc -5'
22872 5' -49.5 NC_005137.2 + 112742 0.67 0.989707
Target:  5'- -aCGUGuCCGUGuuaacgGACGCGGCGCcgcAGUCGa -3'
miRNA:   3'- caGCGU-GGCAU------UUGCGUUGCG---UUAGC- -5'
22872 5' -49.5 NC_005137.2 + 34650 0.67 0.989707
Target:  5'- cGUCGCGgCGUAAgcACGCAccACG-AGUUGg -3'
miRNA:   3'- -CAGCGUgGCAUU--UGCGU--UGCgUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 30755 0.67 0.989707
Target:  5'- -gCGCGcCCGUGcguUGCGGCGCccgGAUCGg -3'
miRNA:   3'- caGCGU-GGCAUuu-GCGUUGCG---UUAGC- -5'
22872 5' -49.5 NC_005137.2 + 97414 0.67 0.989707
Target:  5'- gGUUGgGCaCGUAcaccgGGCGCGGCGCAcUCa -3'
miRNA:   3'- -CAGCgUG-GCAU-----UUGCGUUGCGUuAGc -5'
22872 5' -49.5 NC_005137.2 + 56681 0.68 0.988253
Target:  5'- --gGCGCUGUGGACGUgaccgGACGCGAa-- -3'
miRNA:   3'- cagCGUGGCAUUUGCG-----UUGCGUUagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.