miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22872 5' -49.5 NC_005137.2 + 11493 0.7 0.956128
Target:  5'- aGUCGaGCCGUGuuuuuUGCAguuGCGCAAUCa -3'
miRNA:   3'- -CAGCgUGGCAUuu---GCGU---UGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 7175 0.7 0.956128
Target:  5'- aUCGCGCgCGU---UGCAGCGCAuuUCGa -3'
miRNA:   3'- cAGCGUG-GCAuuuGCGUUGCGUu-AGC- -5'
22872 5' -49.5 NC_005137.2 + 43595 0.7 0.956128
Target:  5'- cUCGCGCUGUAcguguacgaaAACGCAucCGUAAUUGu -3'
miRNA:   3'- cAGCGUGGCAU----------UUGCGUu-GCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 107935 0.7 0.958495
Target:  5'- -aCGCGCCGUGuACGCcaaguacAaauuugucacguauGCGCGAUCGg -3'
miRNA:   3'- caGCGUGGCAUuUGCG-------U--------------UGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 95604 0.7 0.960024
Target:  5'- -gCGCACUGU--GCGCGACGUgcuguuuaacgAGUCGu -3'
miRNA:   3'- caGCGUGGCAuuUGCGUUGCG-----------UUAGC- -5'
22872 5' -49.5 NC_005137.2 + 30940 0.7 0.961513
Target:  5'- -gCGCGCCGcggcacaaagcaugcUGAACGCGccGCGCGccgcGUCGg -3'
miRNA:   3'- caGCGUGGC---------------AUUUGCGU--UGCGU----UAGC- -5'
22872 5' -49.5 NC_005137.2 + 89202 0.7 0.963674
Target:  5'- -gCGCGCCGUGAcaGCGUcagAACGUuuUCGc -3'
miRNA:   3'- caGCGUGGCAUU--UGCG---UUGCGuuAGC- -5'
22872 5' -49.5 NC_005137.2 + 123820 0.7 0.963674
Target:  5'- -aCGCGCCGguucgAAAugcgcUGCAACGCGcgCGa -3'
miRNA:   3'- caGCGUGGCa----UUU-----GCGUUGCGUuaGC- -5'
22872 5' -49.5 NC_005137.2 + 35381 0.69 0.967084
Target:  5'- -cCGCugUGgacaauGACGCGACGCAuuuggaAUCGg -3'
miRNA:   3'- caGCGugGCau----UUGCGUUGCGU------UAGC- -5'
22872 5' -49.5 NC_005137.2 + 101327 0.69 0.967084
Target:  5'- uUUGaCGCCGUcAACGCAAcCGCAAaCGa -3'
miRNA:   3'- cAGC-GUGGCAuUUGCGUU-GCGUUaGC- -5'
22872 5' -49.5 NC_005137.2 + 37553 0.69 0.969955
Target:  5'- -gCGCACCGUGcccguAUGCAuccccgaACGCAuGUCGg -3'
miRNA:   3'- caGCGUGGCAUu----UGCGU-------UGCGU-UAGC- -5'
22872 5' -49.5 NC_005137.2 + 89630 0.69 0.970262
Target:  5'- -aUGCACCGUuu-UGUAcACGCAAUCa -3'
miRNA:   3'- caGCGUGGCAuuuGCGU-UGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 67349 0.69 0.970262
Target:  5'- uUCGgugACCGcGGGCGCGACGCGAUgCGc -3'
miRNA:   3'- cAGCg--UGGCaUUUGCGUUGCGUUA-GC- -5'
22872 5' -49.5 NC_005137.2 + 48749 0.69 0.973214
Target:  5'- cUUGuCGCCGaacAAgGCGGCGCGAUCGu -3'
miRNA:   3'- cAGC-GUGGCau-UUgCGUUGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 57442 0.69 0.975684
Target:  5'- cGUCGCGuacgaauCgGUGGACGCcGCGCAA-CGa -3'
miRNA:   3'- -CAGCGU-------GgCAUUUGCGuUGCGUUaGC- -5'
22872 5' -49.5 NC_005137.2 + 1852 0.69 0.978229
Target:  5'- -gUGCACCGUcguCGCGGCGCcucaaguGAUCa -3'
miRNA:   3'- caGCGUGGCAuuuGCGUUGCG-------UUAGc -5'
22872 5' -49.5 NC_005137.2 + 35099 0.69 0.978472
Target:  5'- -aCGCgGCUGUuuGGCGCaAACGCGGUCa -3'
miRNA:   3'- caGCG-UGGCAu-UUGCG-UUGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 118904 0.69 0.978472
Target:  5'- -cCGuCACCGUuucUGCAGCGCAAcUCGc -3'
miRNA:   3'- caGC-GUGGCAuuuGCGUUGCGUU-AGC- -5'
22872 5' -49.5 NC_005137.2 + 102814 0.69 0.978472
Target:  5'- cGUCGaguUUGUAcACGCGACGCuGUCGc -3'
miRNA:   3'- -CAGCgu-GGCAUuUGCGUUGCGuUAGC- -5'
22872 5' -49.5 NC_005137.2 + 33200 0.69 0.978472
Target:  5'- aUUGCG-CGUcgaaGAGCGCAcCGCGGUCGa -3'
miRNA:   3'- cAGCGUgGCA----UUUGCGUuGCGUUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.