Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 110051 | 0.68 | 0.980794 |
Target: 5'- -gCGCGCCGcAGGCaGCAgACGcCAGUCGu -3' miRNA: 3'- caGCGUGGCaUUUG-CGU-UGC-GUUAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 56574 | 0.68 | 0.980794 |
Target: 5'- uUUGCGCCGUuaugGGACcCGACGCGA-CGg -3' miRNA: 3'- cAGCGUGGCA----UUUGcGUUGCGUUaGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 20424 | 0.68 | 0.980794 |
Target: 5'- cGUCGCACaggaUGGGCGCGccaagACGCAGgugCGg -3' miRNA: 3'- -CAGCGUGgc--AUUUGCGU-----UGCGUUa--GC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 22235 | 0.68 | 0.980794 |
Target: 5'- cGUCGCGuuGUAAGCGUGAucgauguuUGCAAaCGa -3' miRNA: 3'- -CAGCGUggCAUUUGCGUU--------GCGUUaGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 36553 | 0.68 | 0.980794 |
Target: 5'- uUUGUugCGUAAACGCAugGUg---- -3' miRNA: 3'- cAGCGugGCAUUUGCGUugCGuuagc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 93560 | 0.68 | 0.982925 |
Target: 5'- -gCGCAaauaCGUGGuGCGCGGCGgCAAUCa -3' miRNA: 3'- caGCGUg---GCAUU-UGCGUUGC-GUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 63949 | 0.68 | 0.984871 |
Target: 5'- -gCGCACCGUGuuGACGCGcuUGCAAg-- -3' miRNA: 3'- caGCGUGGCAU--UUGCGUu-GCGUUagc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 87969 | 0.68 | 0.984871 |
Target: 5'- gGUCGCcguCCGUGggcGACGCGugGUug-CGg -3' miRNA: 3'- -CAGCGu--GGCAU---UUGCGUugCGuuaGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 51686 | 0.68 | 0.986644 |
Target: 5'- -aC-CACCGUAGACGUgauGCGCGGcUCGu -3' miRNA: 3'- caGcGUGGCAUUUGCGu--UGCGUU-AGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 105629 | 0.68 | 0.986644 |
Target: 5'- uUgGCACCGUAAACuuguuuGCcuucGCGCGAUCc -3' miRNA: 3'- cAgCGUGGCAUUUG------CGu---UGCGUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 21196 | 0.68 | 0.986644 |
Target: 5'- uUUGCGCaCGUGGAUGCuuCGCAGa-- -3' miRNA: 3'- cAGCGUG-GCAUUUGCGuuGCGUUagc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 56681 | 0.68 | 0.988253 |
Target: 5'- --gGCGCUGUGGACGUgaccgGACGCGAa-- -3' miRNA: 3'- cagCGUGGCAUUUGCG-----UUGCGUUagc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 11450 | 0.68 | 0.988253 |
Target: 5'- cGUCGCucuACCG-AGGCuaAACGCAcUCGa -3' miRNA: 3'- -CAGCG---UGGCaUUUGcgUUGCGUuAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 113944 | 0.68 | 0.988253 |
Target: 5'- --gGCACCGU---CGCGAUGCGAUa- -3' miRNA: 3'- cagCGUGGCAuuuGCGUUGCGUUAgc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 112742 | 0.67 | 0.989707 |
Target: 5'- -aCGUGuCCGUGuuaacgGACGCGGCGCcgcAGUCGa -3' miRNA: 3'- caGCGU-GGCAU------UUGCGUUGCG---UUAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 34650 | 0.67 | 0.989707 |
Target: 5'- cGUCGCGgCGUAAgcACGCAccACG-AGUUGg -3' miRNA: 3'- -CAGCGUgGCAUU--UGCGU--UGCgUUAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 30755 | 0.67 | 0.989707 |
Target: 5'- -gCGCGcCCGUGcguUGCGGCGCccgGAUCGg -3' miRNA: 3'- caGCGU-GGCAUuu-GCGUUGCG---UUAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 97414 | 0.67 | 0.989707 |
Target: 5'- gGUUGgGCaCGUAcaccgGGCGCGGCGCAcUCa -3' miRNA: 3'- -CAGCgUG-GCAU-----UUGCGUUGCGUuAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 26654 | 0.67 | 0.991017 |
Target: 5'- cGUCGCAgCGcGAacACGaCGACGCAcgCa -3' miRNA: 3'- -CAGCGUgGCaUU--UGC-GUUGCGUuaGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 42185 | 0.67 | 0.991017 |
Target: 5'- cGUCGCguccGCCGacagGGACgGCGACGCGcgCu -3' miRNA: 3'- -CAGCG----UGGCa---UUUG-CGUUGCGUuaGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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