miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22872 5' -49.5 NC_005137.2 + 11450 0.68 0.988253
Target:  5'- cGUCGCucuACCG-AGGCuaAACGCAcUCGa -3'
miRNA:   3'- -CAGCG---UGGCaUUUGcgUUGCGUuAGC- -5'
22872 5' -49.5 NC_005137.2 + 113944 0.68 0.988253
Target:  5'- --gGCACCGU---CGCGAUGCGAUa- -3'
miRNA:   3'- cagCGUGGCAuuuGCGUUGCGUUAgc -5'
22872 5' -49.5 NC_005137.2 + 105629 0.68 0.986644
Target:  5'- uUgGCACCGUAAACuuguuuGCcuucGCGCGAUCc -3'
miRNA:   3'- cAgCGUGGCAUUUG------CGu---UGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 51686 0.68 0.986644
Target:  5'- -aC-CACCGUAGACGUgauGCGCGGcUCGu -3'
miRNA:   3'- caGcGUGGCAUUUGCGu--UGCGUU-AGC- -5'
22872 5' -49.5 NC_005137.2 + 63949 0.68 0.984871
Target:  5'- -gCGCACCGUGuuGACGCGcuUGCAAg-- -3'
miRNA:   3'- caGCGUGGCAU--UUGCGUu-GCGUUagc -5'
22872 5' -49.5 NC_005137.2 + 93560 0.68 0.982925
Target:  5'- -gCGCAaauaCGUGGuGCGCGGCGgCAAUCa -3'
miRNA:   3'- caGCGUg---GCAUU-UGCGUUGC-GUUAGc -5'
22872 5' -49.5 NC_005137.2 + 36553 0.68 0.980794
Target:  5'- uUUGUugCGUAAACGCAugGUg---- -3'
miRNA:   3'- cAGCGugGCAUUUGCGUugCGuuagc -5'
22872 5' -49.5 NC_005137.2 + 21196 0.68 0.986644
Target:  5'- uUUGCGCaCGUGGAUGCuuCGCAGa-- -3'
miRNA:   3'- cAGCGUG-GCAUUUGCGuuGCGUUagc -5'
22872 5' -49.5 NC_005137.2 + 110051 0.68 0.980794
Target:  5'- -gCGCGCCGcAGGCaGCAgACGcCAGUCGu -3'
miRNA:   3'- caGCGUGGCaUUUG-CGU-UGC-GUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 20424 0.68 0.980794
Target:  5'- cGUCGCACaggaUGGGCGCGccaagACGCAGgugCGg -3'
miRNA:   3'- -CAGCGUGgc--AUUUGCGU-----UGCGUUa--GC- -5'
22872 5' -49.5 NC_005137.2 + 56574 0.68 0.980794
Target:  5'- uUUGCGCCGUuaugGGACcCGACGCGA-CGg -3'
miRNA:   3'- cAGCGUGGCA----UUUGcGUUGCGUUaGC- -5'
22872 5' -49.5 NC_005137.2 + 87969 0.68 0.984871
Target:  5'- gGUCGCcguCCGUGggcGACGCGugGUug-CGg -3'
miRNA:   3'- -CAGCGu--GGCAU---UUGCGUugCGuuaGC- -5'
22872 5' -49.5 NC_005137.2 + 56681 0.68 0.988253
Target:  5'- --gGCGCUGUGGACGUgaccgGACGCGAa-- -3'
miRNA:   3'- cagCGUGGCAUUUGCG-----UUGCGUUagc -5'
22872 5' -49.5 NC_005137.2 + 33200 0.69 0.978472
Target:  5'- aUUGCG-CGUcgaaGAGCGCAcCGCGGUCGa -3'
miRNA:   3'- cAGCGUgGCA----UUUGCGUuGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 101327 0.69 0.967084
Target:  5'- uUUGaCGCCGUcAACGCAAcCGCAAaCGa -3'
miRNA:   3'- cAGC-GUGGCAuUUGCGUU-GCGUUaGC- -5'
22872 5' -49.5 NC_005137.2 + 37553 0.69 0.969955
Target:  5'- -gCGCACCGUGcccguAUGCAuccccgaACGCAuGUCGg -3'
miRNA:   3'- caGCGUGGCAUu----UGCGU-------UGCGU-UAGC- -5'
22872 5' -49.5 NC_005137.2 + 67349 0.69 0.970262
Target:  5'- uUCGgugACCGcGGGCGCGACGCGAUgCGc -3'
miRNA:   3'- cAGCg--UGGCaUUUGCGUUGCGUUA-GC- -5'
22872 5' -49.5 NC_005137.2 + 89630 0.69 0.970262
Target:  5'- -aUGCACCGUuu-UGUAcACGCAAUCa -3'
miRNA:   3'- caGCGUGGCAuuuGCGU-UGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 1852 0.69 0.978229
Target:  5'- -gUGCACCGUcguCGCGGCGCcucaaguGAUCa -3'
miRNA:   3'- caGCGUGGCAuuuGCGUUGCG-------UUAGc -5'
22872 5' -49.5 NC_005137.2 + 118904 0.69 0.978472
Target:  5'- -cCGuCACCGUuucUGCAGCGCAAcUCGc -3'
miRNA:   3'- caGC-GUGGCAuuuGCGUUGCGUU-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.