miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22872 5' -49.5 NC_005137.2 + 51686 0.68 0.986644
Target:  5'- -aC-CACCGUAGACGUgauGCGCGGcUCGu -3'
miRNA:   3'- caGcGUGGCAUUUGCGu--UGCGUU-AGC- -5'
22872 5' -49.5 NC_005137.2 + 52833 0.66 0.996369
Target:  5'- gGUCGUGuuGcUAAacaagcGCGUGACGCAAUCu -3'
miRNA:   3'- -CAGCGUggC-AUU------UGCGUUGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 55032 0.66 0.99573
Target:  5'- -gUGCGCCGUGcAC-CAACGCGcgCc -3'
miRNA:   3'- caGCGUGGCAUuUGcGUUGCGUuaGc -5'
22872 5' -49.5 NC_005137.2 + 56535 0.75 0.78719
Target:  5'- -aCGCGCCGUAcaAACGCAcgguGCGCAAcCa -3'
miRNA:   3'- caGCGUGGCAU--UUGCGU----UGCGUUaGc -5'
22872 5' -49.5 NC_005137.2 + 56574 0.68 0.980794
Target:  5'- uUUGCGCCGUuaugGGACcCGACGCGA-CGg -3'
miRNA:   3'- cAGCGUGGCA----UUUGcGUUGCGUUaGC- -5'
22872 5' -49.5 NC_005137.2 + 56681 0.68 0.988253
Target:  5'- --gGCGCUGUGGACGUgaccgGACGCGAa-- -3'
miRNA:   3'- cagCGUGGCAUUUGCG-----UUGCGUUagc -5'
22872 5' -49.5 NC_005137.2 + 56727 0.67 0.993041
Target:  5'- -aCGCGCCucuuaucauGCGCGaaACGCAAUUGg -3'
miRNA:   3'- caGCGUGGcauu-----UGCGU--UGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 57442 0.69 0.975684
Target:  5'- cGUCGCGuacgaauCgGUGGACGCcGCGCAA-CGa -3'
miRNA:   3'- -CAGCGU-------GgCAUUUGCGuUGCGUUaGC- -5'
22872 5' -49.5 NC_005137.2 + 61737 0.66 0.996928
Target:  5'- -aCGCGCCGcGAccGCGC-ACGCcGUCc -3'
miRNA:   3'- caGCGUGGCaUU--UGCGuUGCGuUAGc -5'
22872 5' -49.5 NC_005137.2 + 63949 0.68 0.984871
Target:  5'- -gCGCACCGUGuuGACGCGcuUGCAAg-- -3'
miRNA:   3'- caGCGUGGCAU--UUGCGUu-GCGUUagc -5'
22872 5' -49.5 NC_005137.2 + 66844 0.66 0.994764
Target:  5'- uGUCcgGCGCCGuUAAACGCGcagggugcgcuuccACGCAcGUCa -3'
miRNA:   3'- -CAG--CGUGGC-AUUUGCGU--------------UGCGU-UAGc -5'
22872 5' -49.5 NC_005137.2 + 67349 0.69 0.970262
Target:  5'- uUCGgugACCGcGGGCGCGACGCGAUgCGc -3'
miRNA:   3'- cAGCg--UGGCaUUUGCGUUGCGUUA-GC- -5'
22872 5' -49.5 NC_005137.2 + 68170 0.66 0.997414
Target:  5'- uUCGCACCGacAAACaaCAAUGCAAUUu -3'
miRNA:   3'- cAGCGUGGCa-UUUGc-GUUGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 69906 0.67 0.994174
Target:  5'- aUCGgACCGccaauGCGCcACGCAaccGUCGg -3'
miRNA:   3'- cAGCgUGGCauu--UGCGuUGCGU---UAGC- -5'
22872 5' -49.5 NC_005137.2 + 78615 0.66 0.99573
Target:  5'- -gCGCGCCGgcGACGaAAUGguGUCc -3'
miRNA:   3'- caGCGUGGCauUUGCgUUGCguUAGc -5'
22872 5' -49.5 NC_005137.2 + 78934 0.66 0.997414
Target:  5'- -aUGUACCGU--GCGaCAACGCGuuUCGc -3'
miRNA:   3'- caGCGUGGCAuuUGC-GUUGCGUu-AGC- -5'
22872 5' -49.5 NC_005137.2 + 82686 0.66 0.994923
Target:  5'- -cCGCcaagGCCGU--GCGCGaccagcuGCGCAAUCa -3'
miRNA:   3'- caGCG----UGGCAuuUGCGU-------UGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 86880 0.72 0.915673
Target:  5'- aUCGCACCGU---UGCggUGCGAUUa -3'
miRNA:   3'- cAGCGUGGCAuuuGCGuuGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 87969 0.68 0.984871
Target:  5'- gGUCGCcguCCGUGggcGACGCGugGUug-CGg -3'
miRNA:   3'- -CAGCGu--GGCAU---UUGCGUugCGuuaGC- -5'
22872 5' -49.5 NC_005137.2 + 88818 0.66 0.997414
Target:  5'- cGUCGCGuccCUGUcggcGGACGCGACGCu---- -3'
miRNA:   3'- -CAGCGU---GGCA----UUUGCGUUGCGuuagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.