Results 21 - 40 of 93 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 33750 | 0.75 | 0.757589 |
Target: 5'- cGUUGUACCGaAAACGCAugGCcAUUGu -3' miRNA: 3'- -CAGCGUGGCaUUUGCGUugCGuUAGC- -5' |
|||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 34534 | 0.73 | 0.858604 |
Target: 5'- -gCGCACCGUGuuGCGUu-CGCGGUCa -3' miRNA: 3'- caGCGUGGCAUu-UGCGuuGCGUUAGc -5' |
|||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 34574 | 0.66 | 0.99573 |
Target: 5'- -cCGCGCa---AACGCAACGCGG-CGg -3' miRNA: 3'- caGCGUGgcauUUGCGUUGCGUUaGC- -5' |
|||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 34650 | 0.67 | 0.989707 |
Target: 5'- cGUCGCGgCGUAAgcACGCAccACG-AGUUGg -3' miRNA: 3'- -CAGCGUgGCAUU--UGCGU--UGCgUUAGC- -5' |
|||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 35099 | 0.69 | 0.978472 |
Target: 5'- -aCGCgGCUGUuuGGCGCaAACGCGGUCa -3' miRNA: 3'- caGCG-UGGCAu-UUGCG-UUGCGUUAGc -5' |
|||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 35360 | 0.72 | 0.915673 |
Target: 5'- cUUGC-CCGUcgGCGCAcgGCGCAcgCGg -3' miRNA: 3'- cAGCGuGGCAuuUGCGU--UGCGUuaGC- -5' |
|||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 35381 | 0.69 | 0.967084 |
Target: 5'- -cCGCugUGgacaauGACGCGACGCAuuuggaAUCGg -3' miRNA: 3'- caGCGugGCau----UUGCGUUGCGU------UAGC- -5' |
|||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 35480 | 0.71 | 0.927367 |
Target: 5'- cGUCGCAC-----ACGCAGCGCAaGUCGc -3' miRNA: 3'- -CAGCGUGgcauuUGCGUUGCGU-UAGC- -5' |
|||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 36553 | 0.68 | 0.980794 |
Target: 5'- uUUGUugCGUAAACGCAugGUg---- -3' miRNA: 3'- cAGCGugGCAUUUGCGUugCGuuagc -5' |
|||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 37553 | 0.69 | 0.969955 |
Target: 5'- -gCGCACCGUGcccguAUGCAuccccgaACGCAuGUCGg -3' miRNA: 3'- caGCGUGGCAUu----UGCGU-------UGCGU-UAGC- -5' |
|||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 41242 | 0.67 | 0.991017 |
Target: 5'- ---aCGCUGgAAACGCgAACGCAAUCGc -3' miRNA: 3'- cagcGUGGCaUUUGCG-UUGCGUUAGC- -5' |
|||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 42185 | 0.67 | 0.991017 |
Target: 5'- cGUCGCguccGCCGacagGGACgGCGACGCGcgCu -3' miRNA: 3'- -CAGCG----UGGCa---UUUG-CGUUGCGUuaGc -5' |
|||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 43595 | 0.7 | 0.956128 |
Target: 5'- cUCGCGCUGUAcguguacgaaAACGCAucCGUAAUUGu -3' miRNA: 3'- cAGCGUGGCAU----------UUGCGUu-GCGUUAGC- -5' |
|||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 43689 | 0.73 | 0.88187 |
Target: 5'- -cUGCGCCGUuu-CGCGACGCGcuUCGu -3' miRNA: 3'- caGCGUGGCAuuuGCGUUGCGUu-AGC- -5' |
|||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 44130 | 0.66 | 0.997414 |
Target: 5'- aUCGCACCGcaacggUGCGAuCGCAAUUc -3' miRNA: 3'- cAGCGUGGCauuu--GCGUU-GCGUUAGc -5' |
|||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 46685 | 0.66 | 0.996369 |
Target: 5'- -aCGCGCCaGUAugcuCGCAcgcGCGCAA-CGg -3' miRNA: 3'- caGCGUGG-CAUuu--GCGU---UGCGUUaGC- -5' |
|||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 48749 | 0.69 | 0.973214 |
Target: 5'- cUUGuCGCCGaacAAgGCGGCGCGAUCGu -3' miRNA: 3'- cAGC-GUGGCau-UUgCGUUGCGUUAGC- -5' |
|||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 49072 | 0.66 | 0.995661 |
Target: 5'- -gCGCACUGcGGGCGCAaaaaacaGCGCAAa-- -3' miRNA: 3'- caGCGUGGCaUUUGCGU-------UGCGUUagc -5' |
|||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 50765 | 0.78 | 0.641776 |
Target: 5'- uUCGCGCCGUcaucAAACGCAaccGCGCAGcCGu -3' miRNA: 3'- cAGCGUGGCA----UUUGCGU---UGCGUUaGC- -5' |
|||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 51315 | 0.71 | 0.938001 |
Target: 5'- -gUGCGCCaaguAACGCAGCGgGGUCGu -3' miRNA: 3'- caGCGUGGcau-UUGCGUUGCgUUAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home