miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22872 5' -49.5 NC_005137.2 + 33750 0.75 0.757589
Target:  5'- cGUUGUACCGaAAACGCAugGCcAUUGu -3'
miRNA:   3'- -CAGCGUGGCaUUUGCGUugCGuUAGC- -5'
22872 5' -49.5 NC_005137.2 + 34534 0.73 0.858604
Target:  5'- -gCGCACCGUGuuGCGUu-CGCGGUCa -3'
miRNA:   3'- caGCGUGGCAUu-UGCGuuGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 34574 0.66 0.99573
Target:  5'- -cCGCGCa---AACGCAACGCGG-CGg -3'
miRNA:   3'- caGCGUGgcauUUGCGUUGCGUUaGC- -5'
22872 5' -49.5 NC_005137.2 + 34650 0.67 0.989707
Target:  5'- cGUCGCGgCGUAAgcACGCAccACG-AGUUGg -3'
miRNA:   3'- -CAGCGUgGCAUU--UGCGU--UGCgUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 35099 0.69 0.978472
Target:  5'- -aCGCgGCUGUuuGGCGCaAACGCGGUCa -3'
miRNA:   3'- caGCG-UGGCAu-UUGCG-UUGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 35360 0.72 0.915673
Target:  5'- cUUGC-CCGUcgGCGCAcgGCGCAcgCGg -3'
miRNA:   3'- cAGCGuGGCAuuUGCGU--UGCGUuaGC- -5'
22872 5' -49.5 NC_005137.2 + 35381 0.69 0.967084
Target:  5'- -cCGCugUGgacaauGACGCGACGCAuuuggaAUCGg -3'
miRNA:   3'- caGCGugGCau----UUGCGUUGCGU------UAGC- -5'
22872 5' -49.5 NC_005137.2 + 35480 0.71 0.927367
Target:  5'- cGUCGCAC-----ACGCAGCGCAaGUCGc -3'
miRNA:   3'- -CAGCGUGgcauuUGCGUUGCGU-UAGC- -5'
22872 5' -49.5 NC_005137.2 + 36553 0.68 0.980794
Target:  5'- uUUGUugCGUAAACGCAugGUg---- -3'
miRNA:   3'- cAGCGugGCAUUUGCGUugCGuuagc -5'
22872 5' -49.5 NC_005137.2 + 37553 0.69 0.969955
Target:  5'- -gCGCACCGUGcccguAUGCAuccccgaACGCAuGUCGg -3'
miRNA:   3'- caGCGUGGCAUu----UGCGU-------UGCGU-UAGC- -5'
22872 5' -49.5 NC_005137.2 + 41242 0.67 0.991017
Target:  5'- ---aCGCUGgAAACGCgAACGCAAUCGc -3'
miRNA:   3'- cagcGUGGCaUUUGCG-UUGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 42185 0.67 0.991017
Target:  5'- cGUCGCguccGCCGacagGGACgGCGACGCGcgCu -3'
miRNA:   3'- -CAGCG----UGGCa---UUUG-CGUUGCGUuaGc -5'
22872 5' -49.5 NC_005137.2 + 43595 0.7 0.956128
Target:  5'- cUCGCGCUGUAcguguacgaaAACGCAucCGUAAUUGu -3'
miRNA:   3'- cAGCGUGGCAU----------UUGCGUu-GCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 43689 0.73 0.88187
Target:  5'- -cUGCGCCGUuu-CGCGACGCGcuUCGu -3'
miRNA:   3'- caGCGUGGCAuuuGCGUUGCGUu-AGC- -5'
22872 5' -49.5 NC_005137.2 + 44130 0.66 0.997414
Target:  5'- aUCGCACCGcaacggUGCGAuCGCAAUUc -3'
miRNA:   3'- cAGCGUGGCauuu--GCGUU-GCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 46685 0.66 0.996369
Target:  5'- -aCGCGCCaGUAugcuCGCAcgcGCGCAA-CGg -3'
miRNA:   3'- caGCGUGG-CAUuu--GCGU---UGCGUUaGC- -5'
22872 5' -49.5 NC_005137.2 + 48749 0.69 0.973214
Target:  5'- cUUGuCGCCGaacAAgGCGGCGCGAUCGu -3'
miRNA:   3'- cAGC-GUGGCau-UUgCGUUGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 49072 0.66 0.995661
Target:  5'- -gCGCACUGcGGGCGCAaaaaacaGCGCAAa-- -3'
miRNA:   3'- caGCGUGGCaUUUGCGU-------UGCGUUagc -5'
22872 5' -49.5 NC_005137.2 + 50765 0.78 0.641776
Target:  5'- uUCGCGCCGUcaucAAACGCAaccGCGCAGcCGu -3'
miRNA:   3'- cAGCGUGGCA----UUUGCGU---UGCGUUaGC- -5'
22872 5' -49.5 NC_005137.2 + 51315 0.71 0.938001
Target:  5'- -gUGCGCCaaguAACGCAGCGgGGUCGu -3'
miRNA:   3'- caGCGUGGcau-UUGCGUUGCgUUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.