Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 99327 | 0.66 | 0.996369 |
Target: 5'- -cCGCACaacc-ACGCGGCGguGUCGu -3' miRNA: 3'- caGCGUGgcauuUGCGUUGCguUAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 98584 | 0.66 | 0.997414 |
Target: 5'- -aCGCACUGUu-GCGCAccuCGCAAa-- -3' miRNA: 3'- caGCGUGGCAuuUGCGUu--GCGUUagc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 97414 | 0.67 | 0.989707 |
Target: 5'- gGUUGgGCaCGUAcaccgGGCGCGGCGCAcUCa -3' miRNA: 3'- -CAGCgUG-GCAU-----UUGCGUUGCGUuAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 97329 | 0.67 | 0.993241 |
Target: 5'- cUUGCGCUcaaAGACGCAACGCGcUCc -3' miRNA: 3'- cAGCGUGGca-UUUGCGUUGCGUuAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 97121 | 1.09 | 0.010558 |
Target: 5'- cGUCGCACCGUAAACGCAACGCAAUCGc -3' miRNA: 3'- -CAGCGUGGCAUUUGCGUUGCGUUAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 95604 | 0.7 | 0.960024 |
Target: 5'- -gCGCACUGU--GCGCGACGUgcuguuuaacgAGUCGu -3' miRNA: 3'- caGCGUGGCAuuUGCGUUGCG-----------UUAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 93754 | 0.66 | 0.996928 |
Target: 5'- gGUCGCGCUGcAGAaaccCGCuuCGCAAUUc -3' miRNA: 3'- -CAGCGUGGCaUUU----GCGuuGCGUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 93560 | 0.68 | 0.982925 |
Target: 5'- -gCGCAaauaCGUGGuGCGCGGCGgCAAUCa -3' miRNA: 3'- caGCGUg---GCAUU-UGCGUUGC-GUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 93550 | 0.7 | 0.947581 |
Target: 5'- cGUCGUGuCCaaguuUAAACGCAACGCGccGUCGu -3' miRNA: 3'- -CAGCGU-GGc----AUUUGCGUUGCGU--UAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 93507 | 0.67 | 0.994174 |
Target: 5'- uGUCGUAgCCGacGGCGCAaAUGCAcgcGUCGg -3' miRNA: 3'- -CAGCGU-GGCauUUGCGU-UGCGU---UAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 92914 | 0.67 | 0.993241 |
Target: 5'- cGUUGC-CCGUGGGCuugucCGugGCGGUCa -3' miRNA: 3'- -CAGCGuGGCAUUUGc----GUugCGUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 89630 | 0.69 | 0.970262 |
Target: 5'- -aUGCACCGUuu-UGUAcACGCAAUCa -3' miRNA: 3'- caGCGUGGCAuuuGCGU-UGCGUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 89202 | 0.7 | 0.963674 |
Target: 5'- -gCGCGCCGUGAcaGCGUcagAACGUuuUCGc -3' miRNA: 3'- caGCGUGGCAUU--UGCG---UUGCGuuAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 88818 | 0.66 | 0.997414 |
Target: 5'- cGUCGCGuccCUGUcggcGGACGCGACGCu---- -3' miRNA: 3'- -CAGCGU---GGCA----UUUGCGUUGCGuuagc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 87969 | 0.68 | 0.984871 |
Target: 5'- gGUCGCcguCCGUGggcGACGCGugGUug-CGg -3' miRNA: 3'- -CAGCGu--GGCAU---UUGCGUugCGuuaGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 86880 | 0.72 | 0.915673 |
Target: 5'- aUCGCACCGU---UGCggUGCGAUUa -3' miRNA: 3'- cAGCGUGGCAuuuGCGuuGCGUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 82686 | 0.66 | 0.994923 |
Target: 5'- -cCGCcaagGCCGU--GCGCGaccagcuGCGCAAUCa -3' miRNA: 3'- caGCG----UGGCAuuUGCGU-------UGCGUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 78934 | 0.66 | 0.997414 |
Target: 5'- -aUGUACCGU--GCGaCAACGCGuuUCGc -3' miRNA: 3'- caGCGUGGCAuuUGC-GUUGCGUu-AGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 78615 | 0.66 | 0.99573 |
Target: 5'- -gCGCGCCGgcGACGaAAUGguGUCc -3' miRNA: 3'- caGCGUGGCauUUGCgUUGCguUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 69906 | 0.67 | 0.994174 |
Target: 5'- aUCGgACCGccaauGCGCcACGCAaccGUCGg -3' miRNA: 3'- cAGCgUGGCauu--UGCGuUGCGU---UAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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