miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22872 5' -49.5 NC_005137.2 + 99327 0.66 0.996369
Target:  5'- -cCGCACaacc-ACGCGGCGguGUCGu -3'
miRNA:   3'- caGCGUGgcauuUGCGUUGCguUAGC- -5'
22872 5' -49.5 NC_005137.2 + 98584 0.66 0.997414
Target:  5'- -aCGCACUGUu-GCGCAccuCGCAAa-- -3'
miRNA:   3'- caGCGUGGCAuuUGCGUu--GCGUUagc -5'
22872 5' -49.5 NC_005137.2 + 97414 0.67 0.989707
Target:  5'- gGUUGgGCaCGUAcaccgGGCGCGGCGCAcUCa -3'
miRNA:   3'- -CAGCgUG-GCAU-----UUGCGUUGCGUuAGc -5'
22872 5' -49.5 NC_005137.2 + 97329 0.67 0.993241
Target:  5'- cUUGCGCUcaaAGACGCAACGCGcUCc -3'
miRNA:   3'- cAGCGUGGca-UUUGCGUUGCGUuAGc -5'
22872 5' -49.5 NC_005137.2 + 97121 1.09 0.010558
Target:  5'- cGUCGCACCGUAAACGCAACGCAAUCGc -3'
miRNA:   3'- -CAGCGUGGCAUUUGCGUUGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 95604 0.7 0.960024
Target:  5'- -gCGCACUGU--GCGCGACGUgcuguuuaacgAGUCGu -3'
miRNA:   3'- caGCGUGGCAuuUGCGUUGCG-----------UUAGC- -5'
22872 5' -49.5 NC_005137.2 + 93754 0.66 0.996928
Target:  5'- gGUCGCGCUGcAGAaaccCGCuuCGCAAUUc -3'
miRNA:   3'- -CAGCGUGGCaUUU----GCGuuGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 93560 0.68 0.982925
Target:  5'- -gCGCAaauaCGUGGuGCGCGGCGgCAAUCa -3'
miRNA:   3'- caGCGUg---GCAUU-UGCGUUGC-GUUAGc -5'
22872 5' -49.5 NC_005137.2 + 93550 0.7 0.947581
Target:  5'- cGUCGUGuCCaaguuUAAACGCAACGCGccGUCGu -3'
miRNA:   3'- -CAGCGU-GGc----AUUUGCGUUGCGU--UAGC- -5'
22872 5' -49.5 NC_005137.2 + 93507 0.67 0.994174
Target:  5'- uGUCGUAgCCGacGGCGCAaAUGCAcgcGUCGg -3'
miRNA:   3'- -CAGCGU-GGCauUUGCGU-UGCGU---UAGC- -5'
22872 5' -49.5 NC_005137.2 + 92914 0.67 0.993241
Target:  5'- cGUUGC-CCGUGGGCuugucCGugGCGGUCa -3'
miRNA:   3'- -CAGCGuGGCAUUUGc----GUugCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 89630 0.69 0.970262
Target:  5'- -aUGCACCGUuu-UGUAcACGCAAUCa -3'
miRNA:   3'- caGCGUGGCAuuuGCGU-UGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 89202 0.7 0.963674
Target:  5'- -gCGCGCCGUGAcaGCGUcagAACGUuuUCGc -3'
miRNA:   3'- caGCGUGGCAUU--UGCG---UUGCGuuAGC- -5'
22872 5' -49.5 NC_005137.2 + 88818 0.66 0.997414
Target:  5'- cGUCGCGuccCUGUcggcGGACGCGACGCu---- -3'
miRNA:   3'- -CAGCGU---GGCA----UUUGCGUUGCGuuagc -5'
22872 5' -49.5 NC_005137.2 + 87969 0.68 0.984871
Target:  5'- gGUCGCcguCCGUGggcGACGCGugGUug-CGg -3'
miRNA:   3'- -CAGCGu--GGCAU---UUGCGUugCGuuaGC- -5'
22872 5' -49.5 NC_005137.2 + 86880 0.72 0.915673
Target:  5'- aUCGCACCGU---UGCggUGCGAUUa -3'
miRNA:   3'- cAGCGUGGCAuuuGCGuuGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 82686 0.66 0.994923
Target:  5'- -cCGCcaagGCCGU--GCGCGaccagcuGCGCAAUCa -3'
miRNA:   3'- caGCG----UGGCAuuUGCGU-------UGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 78934 0.66 0.997414
Target:  5'- -aUGUACCGU--GCGaCAACGCGuuUCGc -3'
miRNA:   3'- caGCGUGGCAuuUGC-GUUGCGUu-AGC- -5'
22872 5' -49.5 NC_005137.2 + 78615 0.66 0.99573
Target:  5'- -gCGCGCCGgcGACGaAAUGguGUCc -3'
miRNA:   3'- caGCGUGGCauUUGCgUUGCguUAGc -5'
22872 5' -49.5 NC_005137.2 + 69906 0.67 0.994174
Target:  5'- aUCGgACCGccaauGCGCcACGCAaccGUCGg -3'
miRNA:   3'- cAGCgUGGCauu--UGCGuUGCGU---UAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.