miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22872 5' -49.5 NC_005137.2 + 129380 0.66 0.997414
Target:  5'- uUUGCAUCGcagUAAACGCAACGU--UUGu -3'
miRNA:   3'- cAGCGUGGC---AUUUGCGUUGCGuuAGC- -5'
22872 5' -49.5 NC_005137.2 + 128740 0.73 0.881129
Target:  5'- uGUCGCGuuuacacagcCCGUAAuCGCAaagguaaACGCGAUCGc -3'
miRNA:   3'- -CAGCGU----------GGCAUUuGCGU-------UGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 125933 0.73 0.874353
Target:  5'- -aCGCGCCGUcucAAuguCGCGGCGCAcgCa -3'
miRNA:   3'- caGCGUGGCA---UUu--GCGUUGCGUuaGc -5'
22872 5' -49.5 NC_005137.2 + 125754 0.67 0.994174
Target:  5'- cUUGCGCCGcGcguuucgagcGGCGCGugGCAAUUu -3'
miRNA:   3'- cAGCGUGGCaU----------UUGCGUugCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 125013 0.67 0.994174
Target:  5'- -cCGCACCGgcGaucgguugcgGCGUGGCGCAggCa -3'
miRNA:   3'- caGCGUGGCauU----------UGCGUUGCGUuaGc -5'
22872 5' -49.5 NC_005137.2 + 123820 0.7 0.963674
Target:  5'- -aCGCGCCGguucgAAAugcgcUGCAACGCGcgCGa -3'
miRNA:   3'- caGCGUGGCa----UUU-----GCGUUGCGUuaGC- -5'
22872 5' -49.5 NC_005137.2 + 118904 0.69 0.978472
Target:  5'- -cCGuCACCGUuucUGCAGCGCAAcUCGc -3'
miRNA:   3'- caGC-GUGGCAuuuGCGUUGCGUU-AGC- -5'
22872 5' -49.5 NC_005137.2 + 118645 0.66 0.995304
Target:  5'- -cCGCACCGUGcuauggaagguggacGACGCuGugGCAaaGUCc -3'
miRNA:   3'- caGCGUGGCAU---------------UUGCG-UugCGU--UAGc -5'
22872 5' -49.5 NC_005137.2 + 113944 0.68 0.988253
Target:  5'- --gGCACCGU---CGCGAUGCGAUa- -3'
miRNA:   3'- cagCGUGGCAuuuGCGUUGCGUUAgc -5'
22872 5' -49.5 NC_005137.2 + 112742 0.67 0.989707
Target:  5'- -aCGUGuCCGUGuuaacgGACGCGGCGCcgcAGUCGa -3'
miRNA:   3'- caGCGU-GGCAU------UUGCGUUGCG---UUAGC- -5'
22872 5' -49.5 NC_005137.2 + 112443 0.66 0.997414
Target:  5'- aGUCG-GCCGuUGGACGCGGCgGCAGgaugggCGa -3'
miRNA:   3'- -CAGCgUGGC-AUUUGCGUUG-CGUUa-----GC- -5'
22872 5' -49.5 NC_005137.2 + 112018 0.67 0.992192
Target:  5'- -aCGUACCGUGAcgcGCuGCGACGUGcUCa -3'
miRNA:   3'- caGCGUGGCAUU---UG-CGUUGCGUuAGc -5'
22872 5' -49.5 NC_005137.2 + 110051 0.68 0.980794
Target:  5'- -gCGCGCCGcAGGCaGCAgACGcCAGUCGu -3'
miRNA:   3'- caGCGUGGCaUUUG-CGU-UGC-GUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 109760 0.71 0.927367
Target:  5'- aGUCGCACCGUuuugguGACaGCGGCccGCAgcGUCGc -3'
miRNA:   3'- -CAGCGUGGCAu-----UUG-CGUUG--CGU--UAGC- -5'
22872 5' -49.5 NC_005137.2 + 108414 0.66 0.99573
Target:  5'- aUCGCgacacgACCGUGGACcaGAUGCGAUUGg -3'
miRNA:   3'- cAGCG------UGGCAUUUGcgUUGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 107935 0.7 0.958495
Target:  5'- -aCGCGCCGUGuACGCcaaguacAaauuugucacguauGCGCGAUCGg -3'
miRNA:   3'- caGCGUGGCAUuUGCG-------U--------------UGCGUUAGC- -5'
22872 5' -49.5 NC_005137.2 + 107005 0.66 0.997414
Target:  5'- cGUgGUugCGcAAACGCuGCGCAG-CGa -3'
miRNA:   3'- -CAgCGugGCaUUUGCGuUGCGUUaGC- -5'
22872 5' -49.5 NC_005137.2 + 105629 0.68 0.986644
Target:  5'- uUgGCACCGUAAACuuguuuGCcuucGCGCGAUCc -3'
miRNA:   3'- cAgCGUGGCAUUUG------CGu---UGCGUUAGc -5'
22872 5' -49.5 NC_005137.2 + 102814 0.69 0.978472
Target:  5'- cGUCGaguUUGUAcACGCGACGCuGUCGc -3'
miRNA:   3'- -CAGCgu-GGCAUuUGCGUUGCGuUAGC- -5'
22872 5' -49.5 NC_005137.2 + 101327 0.69 0.967084
Target:  5'- uUUGaCGCCGUcAACGCAAcCGCAAaCGa -3'
miRNA:   3'- cAGC-GUGGCAuUUGCGUU-GCGUUaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.