Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
22872 | 5' | -49.5 | NC_005137.2 | + | 98584 | 0.66 | 0.997414 |
Target: 5'- -aCGCACUGUu-GCGCAccuCGCAAa-- -3' miRNA: 3'- caGCGUGGCAuuUGCGUu--GCGUUagc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 27425 | 0.66 | 0.997414 |
Target: 5'- --aGCGCUGUAAcagcuggcccACGCGcuugucucguacGCGCAAUUGa -3' miRNA: 3'- cagCGUGGCAUU----------UGCGU------------UGCGUUAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 93754 | 0.66 | 0.996928 |
Target: 5'- gGUCGCGCUGcAGAaaccCGCuuCGCAAUUc -3' miRNA: 3'- -CAGCGUGGCaUUU----GCGuuGCGUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 42185 | 0.67 | 0.991017 |
Target: 5'- cGUCGCguccGCCGacagGGACgGCGACGCGcgCu -3' miRNA: 3'- -CAGCG----UGGCa---UUUG-CGUUGCGUuaGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 97414 | 0.67 | 0.989707 |
Target: 5'- gGUUGgGCaCGUAcaccgGGCGCGGCGCAcUCa -3' miRNA: 3'- -CAGCgUG-GCAU-----UUGCGUUGCGUuAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 30436 | 0.67 | 0.992192 |
Target: 5'- uGUCGCACuCGacAACGCGguucugcuGCGCGGcUCGu -3' miRNA: 3'- -CAGCGUG-GCauUUGCGU--------UGCGUU-AGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 69906 | 0.67 | 0.994174 |
Target: 5'- aUCGgACCGccaauGCGCcACGCAaccGUCGg -3' miRNA: 3'- cAGCgUGGCauu--UGCGuUGCGU---UAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 56727 | 0.67 | 0.993041 |
Target: 5'- -aCGCGCCucuuaucauGCGCGaaACGCAAUUGg -3' miRNA: 3'- caGCGUGGcauu-----UGCGU--UGCGUUAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 26654 | 0.67 | 0.991017 |
Target: 5'- cGUCGCAgCGcGAacACGaCGACGCAcgCa -3' miRNA: 3'- -CAGCGUgGCaUU--UGC-GUUGCGUuaGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 125754 | 0.67 | 0.994174 |
Target: 5'- cUUGCGCCGcGcguuucgagcGGCGCGugGCAAUUu -3' miRNA: 3'- cAGCGUGGCaU----------UUGCGUugCGUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 92914 | 0.67 | 0.993241 |
Target: 5'- cGUUGC-CCGUGGGCuugucCGugGCGGUCa -3' miRNA: 3'- -CAGCGuGGCAUUUGc----GUugCGUUAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 112742 | 0.67 | 0.989707 |
Target: 5'- -aCGUGuCCGUGuuaacgGACGCGGCGCcgcAGUCGa -3' miRNA: 3'- caGCGU-GGCAU------UUGCGUUGCG---UUAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 34650 | 0.67 | 0.989707 |
Target: 5'- cGUCGCGgCGUAAgcACGCAccACG-AGUUGg -3' miRNA: 3'- -CAGCGUgGCAUU--UGCGU--UGCgUUAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 30755 | 0.67 | 0.989707 |
Target: 5'- -gCGCGcCCGUGcguUGCGGCGCccgGAUCGg -3' miRNA: 3'- caGCGU-GGCAUuu-GCGUUGCG---UUAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 112018 | 0.67 | 0.992192 |
Target: 5'- -aCGUACCGUGAcgcGCuGCGACGUGcUCa -3' miRNA: 3'- caGCGUGGCAUU---UG-CGUUGCGUuAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 97329 | 0.67 | 0.993241 |
Target: 5'- cUUGCGCUcaaAGACGCAACGCGcUCc -3' miRNA: 3'- cAGCGUGGca-UUUGCGUUGCGUuAGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 93507 | 0.67 | 0.994174 |
Target: 5'- uGUCGUAgCCGacGGCGCAaAUGCAcgcGUCGg -3' miRNA: 3'- -CAGCGU-GGCauUUGCGU-UGCGU---UAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 125013 | 0.67 | 0.994174 |
Target: 5'- -cCGCACCGgcGaucgguugcgGCGUGGCGCAggCa -3' miRNA: 3'- caGCGUGGCauU----------UGCGUUGCGUuaGc -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 41242 | 0.67 | 0.991017 |
Target: 5'- ---aCGCUGgAAACGCgAACGCAAUCGc -3' miRNA: 3'- cagcGUGGCaUUUGCG-UUGCGUUAGC- -5' |
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22872 | 5' | -49.5 | NC_005137.2 | + | 51686 | 0.68 | 0.986644 |
Target: 5'- -aC-CACCGUAGACGUgauGCGCGGcUCGu -3' miRNA: 3'- caGcGUGGCAUUUGCGu--UGCGUU-AGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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