miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22873 5' -57.5 NC_005137.2 + 1509 0.66 0.836086
Target:  5'- -cGCGcGGCGCCGacgcGUUGUUCAauuCGGCCa -3'
miRNA:   3'- acUGU-UCGCGGCa---CAACGGGU---GCCGG- -5'
22873 5' -57.5 NC_005137.2 + 85977 0.66 0.836086
Target:  5'- cGACGGGC-CCGUaaagauauuuGUgGCCgCGcCGGCCg -3'
miRNA:   3'- aCUGUUCGcGGCA----------CAaCGG-GU-GCCGG- -5'
22873 5' -57.5 NC_005137.2 + 63698 0.66 0.827747
Target:  5'- uUGACGGGCGaugcgggcgaCGUcaaauugcGUUGCCCGCaGCa -3'
miRNA:   3'- -ACUGUUCGCg---------GCA--------CAACGGGUGcCGg -5'
22873 5' -57.5 NC_005137.2 + 49054 0.66 0.827747
Target:  5'- cGACAGGUaGCCGUGcgagcGCaCUGCGGgCg -3'
miRNA:   3'- aCUGUUCG-CGGCACaa---CG-GGUGCCgG- -5'
22873 5' -57.5 NC_005137.2 + 117568 0.66 0.827747
Target:  5'- cGGCAAaguGCGCCGccgGUgcgGCUgACGGgCg -3'
miRNA:   3'- aCUGUU---CGCGGCa--CAa--CGGgUGCCgG- -5'
22873 5' -57.5 NC_005137.2 + 122057 0.66 0.827747
Target:  5'- -cACAAauuGCGgCGUGUccggGUCgGCGGCCg -3'
miRNA:   3'- acUGUU---CGCgGCACAa---CGGgUGCCGG- -5'
22873 5' -57.5 NC_005137.2 + 87084 0.66 0.827747
Target:  5'- aGGCAugaaCGCCGUGcacgcgGCCguuaacaACGGCCa -3'
miRNA:   3'- aCUGUuc--GCGGCACaa----CGGg------UGCCGG- -5'
22873 5' -57.5 NC_005137.2 + 55717 0.66 0.819229
Target:  5'- -aACGAGaCGCCGU--UGCCCGCcguuacaGCCg -3'
miRNA:   3'- acUGUUC-GCGGCAcaACGGGUGc------CGG- -5'
22873 5' -57.5 NC_005137.2 + 118191 0.66 0.819229
Target:  5'- uUGACGccguuGGCGCUGUGggacGCCaCcCGGUCc -3'
miRNA:   3'- -ACUGU-----UCGCGGCACaa--CGG-GuGCCGG- -5'
22873 5' -57.5 NC_005137.2 + 88518 0.66 0.814037
Target:  5'- -aGCAAGCGCCGUGUgcguuCCCaauugaguuuguuguACaGGCUg -3'
miRNA:   3'- acUGUUCGCGGCACAac---GGG---------------UG-CCGG- -5'
22873 5' -57.5 NC_005137.2 + 38658 0.66 0.814037
Target:  5'- gGGCAGGCGCgCGUugcgGcacaaaaaaaauuuuUUGCCCgcuACGGUCa -3'
miRNA:   3'- aCUGUUCGCG-GCA----C---------------AACGGG---UGCCGG- -5'
22873 5' -57.5 NC_005137.2 + 98450 0.66 0.810542
Target:  5'- -cGCAAGCaGCCGc---GUgCACGGCCg -3'
miRNA:   3'- acUGUUCG-CGGCacaaCGgGUGCCGG- -5'
22873 5' -57.5 NC_005137.2 + 50082 0.66 0.792689
Target:  5'- uUGACGcGCGCC------UCCACGGCCg -3'
miRNA:   3'- -ACUGUuCGCGGcacaacGGGUGCCGG- -5'
22873 5' -57.5 NC_005137.2 + 115297 0.66 0.792689
Target:  5'- gGACGAGCuGCgGgcgaUUGCgCCGCGGUUg -3'
miRNA:   3'- aCUGUUCG-CGgCac--AACG-GGUGCCGG- -5'
22873 5' -57.5 NC_005137.2 + 13159 0.66 0.792689
Target:  5'- gGACGcguccGUGCUGgugGUUGCCC-CGGUg -3'
miRNA:   3'- aCUGUu----CGCGGCa--CAACGGGuGCCGg -5'
22873 5' -57.5 NC_005137.2 + 63645 0.67 0.783542
Target:  5'- cGACGGucGCGCauCGcGUcgcGCCCGCGGUCa -3'
miRNA:   3'- aCUGUU--CGCG--GCaCAa--CGGGUGCCGG- -5'
22873 5' -57.5 NC_005137.2 + 64310 0.67 0.783542
Target:  5'- gUGACGcGCGCUGcGccaauUUGCCCGagggcacaGGCCa -3'
miRNA:   3'- -ACUGUuCGCGGCaC-----AACGGGUg-------CCGG- -5'
22873 5' -57.5 NC_005137.2 + 60972 0.67 0.764847
Target:  5'- gGGCGcaccacguacgcGGUGCCGUGggauUGCCgGCGGgUg -3'
miRNA:   3'- aCUGU------------UCGCGGCACa---ACGGgUGCCgG- -5'
22873 5' -57.5 NC_005137.2 + 34052 0.67 0.755319
Target:  5'- uUGACGcuGUuuccgGCCGUGUcguaucUGCCuUGCGGCCa -3'
miRNA:   3'- -ACUGUu-CG-----CGGCACA------ACGG-GUGCCGG- -5'
22873 5' -57.5 NC_005137.2 + 99246 0.67 0.745681
Target:  5'- gGGCGcGCGCCccGUUGCC-ACGGgCa -3'
miRNA:   3'- aCUGUuCGCGGcaCAACGGgUGCCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.