miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22878 5' -53.8 NC_005137.2 + 2118 0.65 0.946282
Target:  5'- aGCGcucgaaaGCGCGUUaGUGGCCAAUauaGUGAg -3'
miRNA:   3'- aUGC-------CGCGCAAaCGCCGGUUG---CAUUg -5'
22878 5' -53.8 NC_005137.2 + 765 0.68 0.84274
Target:  5'- gGCGGCaCGUUUgGCGGCggaGGCgGUGGCa -3'
miRNA:   3'- aUGCCGcGCAAA-CGCCGg--UUG-CAUUG- -5'
22878 5' -53.8 NC_005137.2 + 112445 0.69 0.794736
Target:  5'- aACGGCGCGgucgcaacacgaUGCGGUaauCGUAACc -3'
miRNA:   3'- aUGCCGCGCaa----------ACGCCGguuGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 74486 1.09 0.00357
Target:  5'- gUACGGCGCGUUUGCGGCCAACGUAACg -3'
miRNA:   3'- -AUGCCGCGCAAACGCCGGUUGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 71301 0.66 0.931045
Target:  5'- aGCGG-GCGUggagauggaaCGGCC-ACGUAGCa -3'
miRNA:   3'- aUGCCgCGCAaac-------GCCGGuUGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 57197 0.66 0.926716
Target:  5'- cGCGaCGCGUUUuuGGCCAAccugcagcaggcCGUGGCg -3'
miRNA:   3'- aUGCcGCGCAAAcgCCGGUU------------GCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 83139 0.66 0.925049
Target:  5'- gUugGaGCGCGaccaacaagucaagUUUGUGGCCAaggACGUuGCg -3'
miRNA:   3'- -AugC-CGCGC--------------AAACGCCGGU---UGCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 83541 0.66 0.921073
Target:  5'- aAgGGgGCucaugGCGGCCAACG-AGCg -3'
miRNA:   3'- aUgCCgCGcaaa-CGCCGGUUGCaUUG- -5'
22878 5' -53.8 NC_005137.2 + 32644 0.67 0.889056
Target:  5'- gACGGCGCcaaacCGGCgCAcaaGCGUGACg -3'
miRNA:   3'- aUGCCGCGcaaacGCCG-GU---UGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 8621 0.68 0.859074
Target:  5'- cAgGGCGCuaagGCGGCgGGCGUGGg -3'
miRNA:   3'- aUgCCGCGcaaaCGCCGgUUGCAUUg -5'
22878 5' -53.8 NC_005137.2 + 66211 0.68 0.881912
Target:  5'- -uCGGUGCacauGUUggcGCGGCUAGCGUucAACa -3'
miRNA:   3'- auGCCGCG----CAAa--CGCCGGUUGCA--UUG- -5'
22878 5' -53.8 NC_005137.2 + 114481 0.67 0.902614
Target:  5'- -uCGGCGUaguccgcguccuGUUgccUGUGGUCAACGUAAUc -3'
miRNA:   3'- auGCCGCG------------CAA---ACGCCGGUUGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 81317 0.66 0.937233
Target:  5'- aGCGGCGCGUaguuaccgccGCGcGCCAuUGUcGCg -3'
miRNA:   3'- aUGCCGCGCAaa--------CGC-CGGUuGCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 34602 0.68 0.866914
Target:  5'- cGCcGCGCGggUaGCGGUCGGCGcGGCu -3'
miRNA:   3'- aUGcCGCGCaaA-CGCCGGUUGCaUUG- -5'
22878 5' -53.8 NC_005137.2 + 13548 0.66 0.937233
Target:  5'- uUugGGCGCGUaaaacGCGuuCAGCGUAc- -3'
miRNA:   3'- -AugCCGCGCAaa---CGCcgGUUGCAUug -5'
22878 5' -53.8 NC_005137.2 + 23086 0.67 0.90902
Target:  5'- cACGGCGCGUUguuccGCGGUaagcugggcuACGUGc- -3'
miRNA:   3'- aUGCCGCGCAAa----CGCCGgu--------UGCAUug -5'
22878 5' -53.8 NC_005137.2 + 108562 0.68 0.866914
Target:  5'- gACGGaGCGcacgUUGCccaaaucGCCGACGUGACg -3'
miRNA:   3'- aUGCCgCGCa---AACGc------CGGUUGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 128695 0.69 0.816723
Target:  5'- cACGaGCGCG-UUGCGGUCGAgG-AACc -3'
miRNA:   3'- aUGC-CGCGCaAACGCCGGUUgCaUUG- -5'
22878 5' -53.8 NC_005137.2 + 37449 0.66 0.932102
Target:  5'- gACGGCGCGUUgcguuuaaacuugGacacgacgcaguuuuCGGCCGACGcguGCa -3'
miRNA:   3'- aUGCCGCGCAAa------------C---------------GCCGGUUGCau-UG- -5'
22878 5' -53.8 NC_005137.2 + 31818 0.66 0.926716
Target:  5'- aGCGGCaCGUggGCGG-CAACGUu-- -3'
miRNA:   3'- aUGCCGcGCAaaCGCCgGUUGCAuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.