miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22879 5' -56.1 NC_005137.2 + 130314 0.69 0.731409
Target:  5'- cGCGCaaaGGCG-CUACCGA-UCGcaGCGCg -3'
miRNA:   3'- aCGCG---CCGCaGGUGGCUaAGCa-UGCG- -5'
22879 5' -56.1 NC_005137.2 + 124962 0.67 0.848326
Target:  5'- -aCGCGGCG-CCGgUGAUggggCGcUGCGCu -3'
miRNA:   3'- acGCGCCGCaGGUgGCUAa---GC-AUGCG- -5'
22879 5' -56.1 NC_005137.2 + 124015 0.67 0.85617
Target:  5'- gUGCcCGGCGaCCGCuCGuccgUGUGCGCc -3'
miRNA:   3'- -ACGcGCCGCaGGUG-GCuaa-GCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 118090 0.66 0.878467
Target:  5'- aGUGguagaGGCGUuuGCCGAUUa-UGCGCu -3'
miRNA:   3'- aCGCg----CCGCAggUGGCUAAgcAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 110543 0.71 0.630591
Target:  5'- gGCGUuggaGGUGcCCGCCGA--UGUGCGCc -3'
miRNA:   3'- aCGCG----CCGCaGGUGGCUaaGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 104691 0.7 0.668325
Target:  5'- cGCGCGuguuagaguccagcGCG-CCGCCGuuguacgCGUACGCu -3'
miRNA:   3'- aCGCGC--------------CGCaGGUGGCuaa----GCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 102199 0.66 0.885469
Target:  5'- aGCaGUGGCGUCCGaaUUGAUUuugaCGaGCGCa -3'
miRNA:   3'- aCG-CGCCGCAGGU--GGCUAA----GCaUGCG- -5'
22879 5' -56.1 NC_005137.2 + 101046 0.71 0.630591
Target:  5'- uUGCGCGG-GUCUACgcccUGGUUCGUGaGCg -3'
miRNA:   3'- -ACGCGCCgCAGGUG----GCUAAGCAUgCG- -5'
22879 5' -56.1 NC_005137.2 + 100000 0.67 0.840287
Target:  5'- cGUaGCGGCGcCgACCag--CGUGCGCg -3'
miRNA:   3'- aCG-CGCCGCaGgUGGcuaaGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 99963 0.67 0.848326
Target:  5'- gGcCGCGGcCG-CgCGCCucUUCGUGCGCc -3'
miRNA:   3'- aC-GCGCC-GCaG-GUGGcuAAGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 99377 0.68 0.788361
Target:  5'- cGCGC-GCGUgCACUGAc-CGUugGCc -3'
miRNA:   3'- aCGCGcCGCAgGUGGCUaaGCAugCG- -5'
22879 5' -56.1 NC_005137.2 + 99197 0.67 0.871247
Target:  5'- -aCGCGGCauugggCCGCCGcaUCGcUGCGCc -3'
miRNA:   3'- acGCGCCGca----GGUGGCuaAGC-AUGCG- -5'
22879 5' -56.1 NC_005137.2 + 97992 0.66 0.896206
Target:  5'- cGCGCGGCGUgggugcgcCCGCCaaguggccagCGUGCa- -3'
miRNA:   3'- aCGCGCCGCA--------GGUGGcuaa------GCAUGcg -5'
22879 5' -56.1 NC_005137.2 + 96421 0.76 0.375342
Target:  5'- cGCGCGGCGacgcgcCCGCCGcgUUGcguuUGCGCg -3'
miRNA:   3'- aCGCGCCGCa-----GGUGGCuaAGC----AUGCG- -5'
22879 5' -56.1 NC_005137.2 + 96053 0.72 0.588809
Target:  5'- gUGCGCaGCGUUucuugaaCACuCGGcUCGUGCGCa -3'
miRNA:   3'- -ACGCGcCGCAG-------GUG-GCUaAGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 95647 0.67 0.85617
Target:  5'- cGUGCGcCGUgCGCCGAcgggcaaGUGCGCc -3'
miRNA:   3'- aCGCGCcGCAgGUGGCUaag----CAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 94365 0.66 0.898799
Target:  5'- aGCGCGGCcgagguggUCAUUGAcUCgGUGCGCc -3'
miRNA:   3'- aCGCGCCGca------GGUGGCUaAG-CAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 93573 0.69 0.750833
Target:  5'- gUGCGCGGCGgcaaucaCGCUGAUccaaacgCGcgGCGCu -3'
miRNA:   3'- -ACGCGCCGCag-----GUGGCUAa------GCa-UGCG- -5'
22879 5' -56.1 NC_005137.2 + 91194 0.66 0.898799
Target:  5'- gGCGCGGCGUUUgguuGCaCGcg-UGUugGCc -3'
miRNA:   3'- aCGCGCCGCAGG----UG-GCuaaGCAugCG- -5'
22879 5' -56.1 NC_005137.2 + 91061 0.67 0.863057
Target:  5'- aGUGUGGaCGUUCGaugaacUCGAUUCGUacuuguuGCGCg -3'
miRNA:   3'- aCGCGCC-GCAGGU------GGCUAAGCA-------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.