miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 3' -50.4 NC_005137.2 + 88868 0.67 0.988915
Target:  5'- uCCACGGcgguuccaCGCGUCGAAcGCAgcgUUCGUu -3'
miRNA:   3'- -GGUGCUc-------GCGCAGCUUaUGUa--AGGCG- -5'
22880 3' -50.4 NC_005137.2 + 88511 0.67 0.988915
Target:  5'- gCCGCGcAGCaaGCGcCGuGUGCGUUCC-Ca -3'
miRNA:   3'- -GGUGC-UCG--CGCaGCuUAUGUAAGGcG- -5'
22880 3' -50.4 NC_005137.2 + 87503 0.67 0.992602
Target:  5'- uCgACGAGCGUGauaUCGu----GUUCCGCa -3'
miRNA:   3'- -GgUGCUCGCGC---AGCuuaugUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 87189 0.66 0.995925
Target:  5'- uCgACGGGCGCGggCGGcUGCucgugCCGUc -3'
miRNA:   3'- -GgUGCUCGCGCa-GCUuAUGuaa--GGCG- -5'
22880 3' -50.4 NC_005137.2 + 82124 0.71 0.931927
Target:  5'- gCCGCcAGCGCGgCGcAGUACAUguUCCaGCa -3'
miRNA:   3'- -GGUGcUCGCGCaGC-UUAUGUA--AGG-CG- -5'
22880 3' -50.4 NC_005137.2 + 80171 0.7 0.958893
Target:  5'- gCCGCcGuuuGCGCGUUGuuaauguuGUGCAgcauUUCCGCa -3'
miRNA:   3'- -GGUG-Cu--CGCGCAGCu-------UAUGU----AAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 79725 0.71 0.937045
Target:  5'- aUACGGGCGCGuUUGAAUgguaacaaaccaACGUUgCGCc -3'
miRNA:   3'- gGUGCUCGCGC-AGCUUA------------UGUAAgGCG- -5'
22880 3' -50.4 NC_005137.2 + 78650 0.66 0.996527
Target:  5'- aCUGCGAGuUGUGUCaAAUGCGUgUCgGCu -3'
miRNA:   3'- -GGUGCUC-GCGCAGcUUAUGUA-AGgCG- -5'
22880 3' -50.4 NC_005137.2 + 75971 0.67 0.991502
Target:  5'- aCGCGGcGCGCGUUG-GUGCAcggCGCa -3'
miRNA:   3'- gGUGCU-CGCGCAGCuUAUGUaagGCG- -5'
22880 3' -50.4 NC_005137.2 + 75256 0.69 0.972108
Target:  5'- aCCGCGGGCGC-UUGAAauccACGUucUCCGg -3'
miRNA:   3'- -GGUGCUCGCGcAGCUUa---UGUA--AGGCg -5'
22880 3' -50.4 NC_005137.2 + 74282 0.66 0.996527
Target:  5'- uUCGCGcaugauaagaGGCGCGUUGAGU-CGUUCuugaucguuuuCGCg -3'
miRNA:   3'- -GGUGC----------UCGCGCAGCUUAuGUAAG-----------GCG- -5'
22880 3' -50.4 NC_005137.2 + 70120 1.15 0.004357
Target:  5'- aCCACGAGCGCGUCGAAUACAUUCCGCu -3'
miRNA:   3'- -GGUGCUCGCGCAGCUUAUGUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 67356 0.76 0.689648
Target:  5'- aCCGCGGGCGCGaCGcGAUGCGcgaccgucgCCGCg -3'
miRNA:   3'- -GGUGCUCGCGCaGC-UUAUGUaa-------GGCG- -5'
22880 3' -50.4 NC_005137.2 + 63709 0.68 0.981946
Target:  5'- -uGCGGGCGaCGUCaaauUGCGUUgcCCGCa -3'
miRNA:   3'- ggUGCUCGC-GCAGcuu-AUGUAA--GGCG- -5'
22880 3' -50.4 NC_005137.2 + 60852 0.73 0.842934
Target:  5'- uUACGGGCGCGUCGu---CGUUaaGCg -3'
miRNA:   3'- gGUGCUCGCGCAGCuuauGUAAggCG- -5'
22880 3' -50.4 NC_005137.2 + 57565 0.68 0.979776
Target:  5'- gCCGCGuuuagaaCGCGUCGAGcccaGCGcgCCGCa -3'
miRNA:   3'- -GGUGCuc-----GCGCAGCUUa---UGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 51071 0.74 0.798884
Target:  5'- aCCAUGAGCGUGaUCGAcGUGCAcauaCGCa -3'
miRNA:   3'- -GGUGCUCGCGC-AGCU-UAUGUaag-GCG- -5'
22880 3' -50.4 NC_005137.2 + 49213 0.66 0.996527
Target:  5'- aCGCGAcGCGCGaCGcaaaaacucuAGUGCggUUCGCa -3'
miRNA:   3'- gGUGCU-CGCGCaGC----------UUAUGuaAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 47425 0.66 0.994462
Target:  5'- gCCAUcAGUGCGUUGuuuUGCGUUaccaaCGCg -3'
miRNA:   3'- -GGUGcUCGCGCAGCuu-AUGUAAg----GCG- -5'
22880 3' -50.4 NC_005137.2 + 45110 0.66 0.994462
Target:  5'- cUCGCGGGCGCG-CGAc-GCG--UCGCa -3'
miRNA:   3'- -GGUGCUCGCGCaGCUuaUGUaaGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.