miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 3' -50.4 NC_005137.2 + 110417 0.69 0.974865
Target:  5'- uCCACGuaCGCGUCGAcgGuCAUgUCGCg -3'
miRNA:   3'- -GGUGCucGCGCAGCUuaU-GUAaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 51071 0.74 0.798884
Target:  5'- aCCAUGAGCGUGaUCGAcGUGCAcauaCGCa -3'
miRNA:   3'- -GGUGCUCGCGC-AGCU-UAUGUaag-GCG- -5'
22880 3' -50.4 NC_005137.2 + 42500 0.69 0.974865
Target:  5'- aCACG-GCGCuugcugcgCGGcgACAUUCCGUc -3'
miRNA:   3'- gGUGCuCGCGca------GCUuaUGUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 108754 0.66 0.995239
Target:  5'- uUCGgGAGCGCGcUGcucaaAGUGCAcuUUCCGUg -3'
miRNA:   3'- -GGUgCUCGCGCaGC-----UUAUGU--AAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 96546 0.71 0.926005
Target:  5'- uCCAauuGCGCGUCGggUugGccaccuuUUCUGCu -3'
miRNA:   3'- -GGUgcuCGCGCAGCuuAugU-------AAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 30970 0.7 0.946525
Target:  5'- gCCGCGcGcCGCGUCGGAccgcgugcuUGCGcaCCGCu -3'
miRNA:   3'- -GGUGCuC-GCGCAGCUU---------AUGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 128693 0.75 0.759731
Target:  5'- uCCACGAGCGCGuugcggUCGAggaacccaaaacgAUGCAcaUCCGUg -3'
miRNA:   3'- -GGUGCUCGCGC------AGCU-------------UAUGUa-AGGCG- -5'
22880 3' -50.4 NC_005137.2 + 70120 1.15 0.004357
Target:  5'- aCCACGAGCGCGUCGAAUACAUUCCGCu -3'
miRNA:   3'- -GGUGCUCGCGCAGCUUAUGUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 22266 0.66 0.995239
Target:  5'- -aACGAuGCGCGUCGuuug---UCUGCg -3'
miRNA:   3'- ggUGCU-CGCGCAGCuuauguaAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 87189 0.66 0.995925
Target:  5'- uCgACGGGCGCGggCGGcUGCucgugCCGUc -3'
miRNA:   3'- -GgUGCUCGCGCa-GCUuAUGuaa--GGCG- -5'
22880 3' -50.4 NC_005137.2 + 7867 0.66 0.994784
Target:  5'- uCCACGAGCGUGcCGucacguaggaaaacGUGCAcaCCGg -3'
miRNA:   3'- -GGUGCUCGCGCaGCu-------------UAUGUaaGGCg -5'
22880 3' -50.4 NC_005137.2 + 43567 0.66 0.995239
Target:  5'- -uGCGGGCGCa-CGAAUGCGUaCUGg -3'
miRNA:   3'- ggUGCUCGCGcaGCUUAUGUAaGGCg -5'
22880 3' -50.4 NC_005137.2 + 110429 0.72 0.90892
Target:  5'- -aACGGGCGCGaCGGugagcGUGCAcaCCGCg -3'
miRNA:   3'- ggUGCUCGCGCaGCU-----UAUGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 38341 0.67 0.992602
Target:  5'- -gGCGuaagcAGCGCGUUGAcagugGCGUUgaCCGCa -3'
miRNA:   3'- ggUGC-----UCGCGCAGCUua---UGUAA--GGCG- -5'
22880 3' -50.4 NC_005137.2 + 87503 0.67 0.992602
Target:  5'- uCgACGAGCGUGauaUCGu----GUUCCGCa -3'
miRNA:   3'- -GgUGCUCGCGC---AGCuuaugUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 75971 0.67 0.991502
Target:  5'- aCGCGGcGCGCGUUG-GUGCAcggCGCa -3'
miRNA:   3'- gGUGCU-CGCGCAGCuUAUGUaagGCG- -5'
22880 3' -50.4 NC_005137.2 + 107963 0.67 0.991502
Target:  5'- gUCACGuauGCGCGaUCGGucGCGUUgaCGCg -3'
miRNA:   3'- -GGUGCu--CGCGC-AGCUuaUGUAAg-GCG- -5'
22880 3' -50.4 NC_005137.2 + 115298 0.67 0.990276
Target:  5'- -gACGAGCuGCGggCGAuUGCg--CCGCg -3'
miRNA:   3'- ggUGCUCG-CGCa-GCUuAUGuaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 80171 0.7 0.958893
Target:  5'- gCCGCcGuuuGCGCGUUGuuaauguuGUGCAgcauUUCCGCa -3'
miRNA:   3'- -GGUG-Cu--CGCGCAGCu-------UAUGU----AAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 35714 0.69 0.969138
Target:  5'- -aACGGGCGCGUUGucGUGCuuaaUCGCg -3'
miRNA:   3'- ggUGCUCGCGCAGCu-UAUGuaa-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.