miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 5' -52.6 NC_005137.2 + 48170 0.67 0.945456
Target:  5'- -gGCUUGcgaauuauaauauccACGGCGACGUGUgCGUGu- -3'
miRNA:   3'- cgCGAAU---------------UGCUGCUGCGCGgGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 118651 0.67 0.943611
Target:  5'- cGUGCUauggaagGugGACGACGCuguggcaaaGUCCGUGGu -3'
miRNA:   3'- -CGCGAa------UugCUGCUGCG---------CGGGCAUUu -5'
22880 5' -52.6 NC_005137.2 + 93344 0.67 0.943611
Target:  5'- cGUGCUgacCGGCGACGCGUuaGUu-- -3'
miRNA:   3'- -CGCGAauuGCUGCUGCGCGggCAuuu -5'
22880 5' -52.6 NC_005137.2 + 82232 0.67 0.943611
Target:  5'- aCGCUguGCGGCGcCGCGUCCa---- -3'
miRNA:   3'- cGCGAauUGCUGCuGCGCGGGcauuu -5'
22880 5' -52.6 NC_005137.2 + 75589 0.67 0.943611
Target:  5'- aCGCgg-GCGGCGcCGUGCgCGUGGAg -3'
miRNA:   3'- cGCGaauUGCUGCuGCGCGgGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 110803 0.67 0.943611
Target:  5'- cGCGCUUu-CGcaauCGACGCcGCCCGc--- -3'
miRNA:   3'- -CGCGAAuuGCu---GCUGCG-CGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 35728 0.67 0.943611
Target:  5'- cGUGCUUAAUcGCGACaCGUCgGUAAAu -3'
miRNA:   3'- -CGCGAAUUGcUGCUGcGCGGgCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 17315 0.67 0.943611
Target:  5'- cGCGCUguGCGACGuGCGCGUCg----- -3'
miRNA:   3'- -CGCGAauUGCUGC-UGCGCGGgcauuu -5'
22880 5' -52.6 NC_005137.2 + 2327 0.67 0.938823
Target:  5'- cGCGCUcGugGA-GGCGUGCauggCCGUAAAc -3'
miRNA:   3'- -CGCGAaUugCUgCUGCGCG----GGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 33020 0.67 0.938823
Target:  5'- gGCGCacccACGcCG-CGCGCCCGUu-- -3'
miRNA:   3'- -CGCGaau-UGCuGCuGCGCGGGCAuuu -5'
22880 5' -52.6 NC_005137.2 + 8456 0.67 0.93833
Target:  5'- uCGCUUAcgcaauuGCGACGcgccgauaACGUGCCCGa--- -3'
miRNA:   3'- cGCGAAU-------UGCUGC--------UGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 6612 0.68 0.933781
Target:  5'- cGCGCUgaAACGACGcGCGCGCagcaugaCGUu-- -3'
miRNA:   3'- -CGCGAa-UUGCUGC-UGCGCGg------GCAuuu -5'
22880 5' -52.6 NC_005137.2 + 26660 0.68 0.933781
Target:  5'- aGCGCgaacACGACGACGCacGCaCGUGc- -3'
miRNA:   3'- -CGCGaau-UGCUGCUGCG--CGgGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 85892 0.68 0.933781
Target:  5'- -aGUUguGCGACGcgucGCGCGCCCGcGAGu -3'
miRNA:   3'- cgCGAauUGCUGC----UGCGCGGGCaUUU- -5'
22880 5' -52.6 NC_005137.2 + 78889 0.68 0.928484
Target:  5'- uGCGCUUGGCG--GGCGUGCCUa---- -3'
miRNA:   3'- -CGCGAAUUGCugCUGCGCGGGcauuu -5'
22880 5' -52.6 NC_005137.2 + 6617 0.68 0.922932
Target:  5'- aCGCUUuuCGAuauCGACuGUGCUCGUAAAg -3'
miRNA:   3'- cGCGAAuuGCU---GCUG-CGCGGGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 26700 0.68 0.917125
Target:  5'- gGCGCUgAACGGCGGCGaagaaG-CCGUGc- -3'
miRNA:   3'- -CGCGAaUUGCUGCUGCg----CgGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 99539 0.68 0.917125
Target:  5'- cGCGUUUAACuGCGucaGCGCGCUCGc--- -3'
miRNA:   3'- -CGCGAAUUGcUGC---UGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 118099 0.68 0.911064
Target:  5'- gGCGUUUGcCGAUuAUGCGCUCGUGu- -3'
miRNA:   3'- -CGCGAAUuGCUGcUGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 85965 0.68 0.911064
Target:  5'- -aGacaUUGAUuACGACGgGCCCGUAAAg -3'
miRNA:   3'- cgCg--AAUUGcUGCUGCgCGGGCAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.