miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 5' -52.6 NC_005137.2 + 80246 0.8 0.319017
Target:  5'- uGCGUUUGAUGACGGCGCGaacgCCGUGGc -3'
miRNA:   3'- -CGCGAAUUGCUGCUGCGCg---GGCAUUu -5'
22880 5' -52.6 NC_005137.2 + 96405 0.78 0.437099
Target:  5'- cGCGCcgAccgcuacccgcGCGGCGACGCGCCCGc--- -3'
miRNA:   3'- -CGCGaaU-----------UGCUGCUGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 60872 0.77 0.494829
Target:  5'- aGCGCUauuuUAGCGGaauguauuCGACGCGCUCGUGGu -3'
miRNA:   3'- -CGCGA----AUUGCU--------GCUGCGCGGGCAUUu -5'
22880 5' -52.6 NC_005137.2 + 97990 0.74 0.629299
Target:  5'- gGCGCgcGGCGugGGUGCGCCCGc--- -3'
miRNA:   3'- -CGCGaaUUGCugCUGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 110643 0.72 0.743736
Target:  5'- cGCGCc-GACGGCGuuuggcuUGUGCCCGUGAc -3'
miRNA:   3'- -CGCGaaUUGCUGCu------GCGCGGGCAUUu -5'
22880 5' -52.6 NC_005137.2 + 130957 0.72 0.752722
Target:  5'- cGCGCUUuuauacaAGCGguuGACGCGCCCGa--- -3'
miRNA:   3'- -CGCGAA-------UUGCug-CUGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 56339 0.72 0.763579
Target:  5'- cGUGCUUGccuguuCGACGACGCGguaaCCCGUc-- -3'
miRNA:   3'- -CGCGAAUu-----GCUGCUGCGC----GGGCAuuu -5'
22880 5' -52.6 NC_005137.2 + 17518 0.71 0.782924
Target:  5'- uGCGCgUUAACGAgGGCGCGCUUa---- -3'
miRNA:   3'- -CGCG-AAUUGCUgCUGCGCGGGcauuu -5'
22880 5' -52.6 NC_005137.2 + 32881 0.71 0.792384
Target:  5'- cGCGCgu-ACGACGACGCGguagCCGg--- -3'
miRNA:   3'- -CGCGaauUGCUGCUGCGCg---GGCauuu -5'
22880 5' -52.6 NC_005137.2 + 20625 0.71 0.801691
Target:  5'- aGCGacaugGGCGugGugGCGCUCGUuGAa -3'
miRNA:   3'- -CGCgaa--UUGCugCugCGCGGGCAuUU- -5'
22880 5' -52.6 NC_005137.2 + 27461 0.7 0.853771
Target:  5'- cGCGCaaUUGACGucGCGACGUGCgCCGc--- -3'
miRNA:   3'- -CGCG--AAUUGC--UGCUGCGCG-GGCauuu -5'
22880 5' -52.6 NC_005137.2 + 13068 0.7 0.861746
Target:  5'- cGCGUUU-GCGAa-ACGCGCCCGa--- -3'
miRNA:   3'- -CGCGAAuUGCUgcUGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 87040 0.69 0.8695
Target:  5'- gGCGaguacaacaUGGCgGugGACGCGCCCGUuGAa -3'
miRNA:   3'- -CGCga-------AUUG-CugCUGCGCGGGCAuUU- -5'
22880 5' -52.6 NC_005137.2 + 112399 0.69 0.8695
Target:  5'- uGCGCgaucGCGcACGGCGCGCCauuGUGc- -3'
miRNA:   3'- -CGCGaau-UGC-UGCUGCGCGGg--CAUuu -5'
22880 5' -52.6 NC_005137.2 + 56668 0.69 0.891374
Target:  5'- cGUGCUUGcCGACGGCGCuGUggaCGUGAc -3'
miRNA:   3'- -CGCGAAUuGCUGCUGCG-CGg--GCAUUu -5'
22880 5' -52.6 NC_005137.2 + 18243 0.69 0.898185
Target:  5'- uGCGCgucguucgUAcuGCGGCGcCGCGUCCGUu-- -3'
miRNA:   3'- -CGCGa-------AU--UGCUGCuGCGCGGGCAuuu -5'
22880 5' -52.6 NC_005137.2 + 26700 0.68 0.917125
Target:  5'- gGCGCUgAACGGCGGCGaagaaG-CCGUGc- -3'
miRNA:   3'- -CGCGAaUUGCUGCUGCg----CgGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 6617 0.68 0.922932
Target:  5'- aCGCUUuuCGAuauCGACuGUGCUCGUAAAg -3'
miRNA:   3'- cGCGAAuuGCU---GCUG-CGCGGGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 94971 0.66 0.973196
Target:  5'- aCGCUuuUAACGcc--CGCGCCCGUGu- -3'
miRNA:   3'- cGCGA--AUUGCugcuGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 63023 0.66 0.9703
Target:  5'- cGCGCguggccAACGACGACGUGCg------ -3'
miRNA:   3'- -CGCGaa----UUGCUGCUGCGCGggcauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.