Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22882 | 3' | -53.9 | NC_005137.2 | + | 27486 | 0.66 | 0.966353 |
Target: 5'- cCGCCaGUCAAUGCuagaAAAUGCGUUgcaGGGu -3' miRNA: 3'- aGCGGgCAGUUGUG----UUUGCGCAG---CCC- -5' |
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22882 | 3' | -53.9 | NC_005137.2 | + | 120734 | 0.66 | 0.966033 |
Target: 5'- -gGCCaCG-UAAUggggaauuugguuGCAAACGCGUCGGa -3' miRNA: 3'- agCGG-GCaGUUG-------------UGUUUGCGCAGCCc -5' |
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22882 | 3' | -53.9 | NC_005137.2 | + | 115741 | 0.66 | 0.96305 |
Target: 5'- aCGCCaagGUgCAACGCAAcguGCGCGcgCGGc -3' miRNA: 3'- aGCGGg--CA-GUUGUGUU---UGCGCa-GCCc -5' |
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22882 | 3' | -53.9 | NC_005137.2 | + | 118145 | 0.66 | 0.96305 |
Target: 5'- gCGCCCGUgAuC-CAGAUuGCGcCGGGc -3' miRNA: 3'- aGCGGGCAgUuGuGUUUG-CGCaGCCC- -5' |
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22882 | 3' | -53.9 | NC_005137.2 | + | 108037 | 0.66 | 0.962016 |
Target: 5'- aUCGCCCGUgucuagagaagaaaCuuuGCGCGuggaacACGCGacgCGGGg -3' miRNA: 3'- -AGCGGGCA--------------Gu--UGUGUu-----UGCGCa--GCCC- -5' |
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22882 | 3' | -53.9 | NC_005137.2 | + | 32634 | 0.66 | 0.960962 |
Target: 5'- -aGCCCGUCgcgAcggcgccaaaccggcGCACAAGCGUGaCGGu -3' miRNA: 3'- agCGGGCAG---U---------------UGUGUUUGCGCaGCCc -5' |
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22882 | 3' | -53.9 | NC_005137.2 | + | 97933 | 0.66 | 0.959526 |
Target: 5'- -gGCgUGUCAaguacuugcuGCACAaucucuagAACGCGUCGGc -3' miRNA: 3'- agCGgGCAGU----------UGUGU--------UUGCGCAGCCc -5' |
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22882 | 3' | -53.9 | NC_005137.2 | + | 98122 | 0.66 | 0.959526 |
Target: 5'- cCGCCggcuaccgCGUCGuCGUAcGCGCGUUGGGa -3' miRNA: 3'- aGCGG--------GCAGUuGUGUuUGCGCAGCCC- -5' |
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22882 | 3' | -53.9 | NC_005137.2 | + | 98006 | 0.66 | 0.959526 |
Target: 5'- gCGCCCGccaaGugGCcAGCGUgcacGUCGGGc -3' miRNA: 3'- aGCGGGCag--UugUGuUUGCG----CAGCCC- -5' |
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22882 | 3' | -53.9 | NC_005137.2 | + | 6847 | 0.66 | 0.959526 |
Target: 5'- gCGUCCGUguuGCuauCGAACGUGUCgcuGGGg -3' miRNA: 3'- aGCGGGCAgu-UGu--GUUUGCGCAG---CCC- -5' |
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22882 | 3' | -53.9 | NC_005137.2 | + | 49731 | 0.66 | 0.959526 |
Target: 5'- uUCGUCCG-CuuCAUcgGCGCGUCGu- -3' miRNA: 3'- -AGCGGGCaGuuGUGuuUGCGCAGCcc -5' |
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22882 | 3' | -53.9 | NC_005137.2 | + | 27911 | 0.66 | 0.955779 |
Target: 5'- aUCGCCCGgCAAC-CAAuuGCGCacgCGGu -3' miRNA: 3'- -AGCGGGCaGUUGuGUU--UGCGca-GCCc -5' |
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22882 | 3' | -53.9 | NC_005137.2 | + | 68742 | 0.66 | 0.955779 |
Target: 5'- gUUG-CCGUCGAC-C-AACGCGUUGGu -3' miRNA: 3'- -AGCgGGCAGUUGuGuUUGCGCAGCCc -5' |
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22882 | 3' | -53.9 | NC_005137.2 | + | 76581 | 0.66 | 0.955779 |
Target: 5'- aCGCCCGaUC-ACAUGcuCGUGUUGGa -3' miRNA: 3'- aGCGGGC-AGuUGUGUuuGCGCAGCCc -5' |
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22882 | 3' | -53.9 | NC_005137.2 | + | 56574 | 0.66 | 0.951802 |
Target: 5'- uUUGCgCCGUUAugGgAcccGACGCGaCGGGc -3' miRNA: 3'- -AGCG-GGCAGUugUgU---UUGCGCaGCCC- -5' |
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22882 | 3' | -53.9 | NC_005137.2 | + | 119730 | 0.66 | 0.947592 |
Target: 5'- uUUGUgCGUCAGCGCGuagcggacgucAGCGCGcuggaGGGg -3' miRNA: 3'- -AGCGgGCAGUUGUGU-----------UUGCGCag---CCC- -5' |
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22882 | 3' | -53.9 | NC_005137.2 | + | 110628 | 0.66 | 0.947592 |
Target: 5'- aCGgCCGU--GCACAAACGCGcCGa- -3' miRNA: 3'- aGCgGGCAguUGUGUUUGCGCaGCcc -5' |
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22882 | 3' | -53.9 | NC_005137.2 | + | 88580 | 0.66 | 0.947592 |
Target: 5'- gCGCgCGgcgGACACAunACGUGUcccggCGGGg -3' miRNA: 3'- aGCGgGCag-UUGUGUu-UGCGCA-----GCCC- -5' |
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22882 | 3' | -53.9 | NC_005137.2 | + | 44370 | 0.67 | 0.943146 |
Target: 5'- -aGCgCGUCGcgGCAUuuuuucuucguaAAGgGCGUCGGGa -3' miRNA: 3'- agCGgGCAGU--UGUG------------UUUgCGCAGCCC- -5' |
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22882 | 3' | -53.9 | NC_005137.2 | + | 74983 | 0.67 | 0.942689 |
Target: 5'- cUGCCCGUUgaAACAUuguucuGAACGUGUaaucgagCGGGg -3' miRNA: 3'- aGCGGGCAG--UUGUG------UUUGCGCA-------GCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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