miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22882 3' -53.9 NC_005137.2 + 27486 0.66 0.966353
Target:  5'- cCGCCaGUCAAUGCuagaAAAUGCGUUgcaGGGu -3'
miRNA:   3'- aGCGGgCAGUUGUG----UUUGCGCAG---CCC- -5'
22882 3' -53.9 NC_005137.2 + 120734 0.66 0.966033
Target:  5'- -gGCCaCG-UAAUggggaauuugguuGCAAACGCGUCGGa -3'
miRNA:   3'- agCGG-GCaGUUG-------------UGUUUGCGCAGCCc -5'
22882 3' -53.9 NC_005137.2 + 118145 0.66 0.96305
Target:  5'- gCGCCCGUgAuC-CAGAUuGCGcCGGGc -3'
miRNA:   3'- aGCGGGCAgUuGuGUUUG-CGCaGCCC- -5'
22882 3' -53.9 NC_005137.2 + 115741 0.66 0.96305
Target:  5'- aCGCCaagGUgCAACGCAAcguGCGCGcgCGGc -3'
miRNA:   3'- aGCGGg--CA-GUUGUGUU---UGCGCa-GCCc -5'
22882 3' -53.9 NC_005137.2 + 108037 0.66 0.962016
Target:  5'- aUCGCCCGUgucuagagaagaaaCuuuGCGCGuggaacACGCGacgCGGGg -3'
miRNA:   3'- -AGCGGGCA--------------Gu--UGUGUu-----UGCGCa--GCCC- -5'
22882 3' -53.9 NC_005137.2 + 32634 0.66 0.960962
Target:  5'- -aGCCCGUCgcgAcggcgccaaaccggcGCACAAGCGUGaCGGu -3'
miRNA:   3'- agCGGGCAG---U---------------UGUGUUUGCGCaGCCc -5'
22882 3' -53.9 NC_005137.2 + 6847 0.66 0.959526
Target:  5'- gCGUCCGUguuGCuauCGAACGUGUCgcuGGGg -3'
miRNA:   3'- aGCGGGCAgu-UGu--GUUUGCGCAG---CCC- -5'
22882 3' -53.9 NC_005137.2 + 98006 0.66 0.959526
Target:  5'- gCGCCCGccaaGugGCcAGCGUgcacGUCGGGc -3'
miRNA:   3'- aGCGGGCag--UugUGuUUGCG----CAGCCC- -5'
22882 3' -53.9 NC_005137.2 + 98122 0.66 0.959526
Target:  5'- cCGCCggcuaccgCGUCGuCGUAcGCGCGUUGGGa -3'
miRNA:   3'- aGCGG--------GCAGUuGUGUuUGCGCAGCCC- -5'
22882 3' -53.9 NC_005137.2 + 97933 0.66 0.959526
Target:  5'- -gGCgUGUCAaguacuugcuGCACAaucucuagAACGCGUCGGc -3'
miRNA:   3'- agCGgGCAGU----------UGUGU--------UUGCGCAGCCc -5'
22882 3' -53.9 NC_005137.2 + 49731 0.66 0.959526
Target:  5'- uUCGUCCG-CuuCAUcgGCGCGUCGu- -3'
miRNA:   3'- -AGCGGGCaGuuGUGuuUGCGCAGCcc -5'
22882 3' -53.9 NC_005137.2 + 76581 0.66 0.955779
Target:  5'- aCGCCCGaUC-ACAUGcuCGUGUUGGa -3'
miRNA:   3'- aGCGGGC-AGuUGUGUuuGCGCAGCCc -5'
22882 3' -53.9 NC_005137.2 + 68742 0.66 0.955779
Target:  5'- gUUG-CCGUCGAC-C-AACGCGUUGGu -3'
miRNA:   3'- -AGCgGGCAGUUGuGuUUGCGCAGCCc -5'
22882 3' -53.9 NC_005137.2 + 27911 0.66 0.955779
Target:  5'- aUCGCCCGgCAAC-CAAuuGCGCacgCGGu -3'
miRNA:   3'- -AGCGGGCaGUUGuGUU--UGCGca-GCCc -5'
22882 3' -53.9 NC_005137.2 + 56574 0.66 0.951802
Target:  5'- uUUGCgCCGUUAugGgAcccGACGCGaCGGGc -3'
miRNA:   3'- -AGCG-GGCAGUugUgU---UUGCGCaGCCC- -5'
22882 3' -53.9 NC_005137.2 + 119730 0.66 0.947592
Target:  5'- uUUGUgCGUCAGCGCGuagcggacgucAGCGCGcuggaGGGg -3'
miRNA:   3'- -AGCGgGCAGUUGUGU-----------UUGCGCag---CCC- -5'
22882 3' -53.9 NC_005137.2 + 88580 0.66 0.947592
Target:  5'- gCGCgCGgcgGACACAunACGUGUcccggCGGGg -3'
miRNA:   3'- aGCGgGCag-UUGUGUu-UGCGCA-----GCCC- -5'
22882 3' -53.9 NC_005137.2 + 110628 0.66 0.947592
Target:  5'- aCGgCCGU--GCACAAACGCGcCGa- -3'
miRNA:   3'- aGCgGGCAguUGUGUUUGCGCaGCcc -5'
22882 3' -53.9 NC_005137.2 + 44370 0.67 0.943146
Target:  5'- -aGCgCGUCGcgGCAUuuuuucuucguaAAGgGCGUCGGGa -3'
miRNA:   3'- agCGgGCAGU--UGUG------------UUUgCGCAGCCC- -5'
22882 3' -53.9 NC_005137.2 + 74983 0.67 0.942689
Target:  5'- cUGCCCGUUgaAACAUuguucuGAACGUGUaaucgagCGGGg -3'
miRNA:   3'- aGCGGGCAG--UUGUG------UUUGCGCA-------GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.