miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22883 5' -54.1 NC_005137.2 + 130620 0.68 0.885249
Target:  5'- cGGACA--CGCGCGCCGacaaagccagcaaaaGCGAGCUc -3'
miRNA:   3'- -CCUGUaaGCGCGUGGCgca------------CGCUUGG- -5'
22883 5' -54.1 NC_005137.2 + 124971 0.68 0.903216
Target:  5'- cGGugAUggggCGCuGCGCUGCGUuggaaaucggGCGGgauGCCg -3'
miRNA:   3'- -CCugUAa---GCG-CGUGGCGCA----------CGCU---UGG- -5'
22883 5' -54.1 NC_005137.2 + 117568 0.66 0.946204
Target:  5'- cGGCAaa-GUGCGCCGCcgGUGCG-GCUg -3'
miRNA:   3'- cCUGUaagCGCGUGGCG--CACGCuUGG- -5'
22883 5' -54.1 NC_005137.2 + 114093 0.77 0.428096
Target:  5'- uGAUcaGUUCGCcgaGCGCCGCGUGCGucugcACCg -3'
miRNA:   3'- cCUG--UAAGCG---CGUGGCGCACGCu----UGG- -5'
22883 5' -54.1 NC_005137.2 + 112850 0.67 0.915414
Target:  5'- -aGCcUUCGCGCAUCGC-UGCGGcUCg -3'
miRNA:   3'- ccUGuAAGCGCGUGGCGcACGCUuGG- -5'
22883 5' -54.1 NC_005137.2 + 112658 0.67 0.936418
Target:  5'- cGACAaaUUCGCGCACUGcCGUcucguagauuuugGCGu-CCg -3'
miRNA:   3'- cCUGU--AAGCGCGUGGC-GCA-------------CGCuuGG- -5'
22883 5' -54.1 NC_005137.2 + 106582 0.71 0.755785
Target:  5'- uGGACAUUuaCG-GCGCCGCGguguugacgaUGCGuAGCCc -3'
miRNA:   3'- -CCUGUAA--GCgCGUGGCGC----------ACGC-UUGG- -5'
22883 5' -54.1 NC_005137.2 + 105835 0.66 0.958375
Target:  5'- cGGCAgaaccucCGCGUGCUccagacacggagGCGUGCGAguugGCCg -3'
miRNA:   3'- cCUGUaa-----GCGCGUGG------------CGCACGCU----UGG- -5'
22883 5' -54.1 NC_005137.2 + 102925 0.68 0.890069
Target:  5'- cGGCAggC-CGCGCUGCGUGUacAGCCg -3'
miRNA:   3'- cCUGUaaGcGCGUGGCGCACGc-UUGG- -5'
22883 5' -54.1 NC_005137.2 + 99363 0.67 0.921151
Target:  5'- -aGCGUggUCGCGUccGCgCGCGUGCacuGACCg -3'
miRNA:   3'- ccUGUA--AGCGCG--UG-GCGCACGc--UUGG- -5'
22883 5' -54.1 NC_005137.2 + 98796 0.69 0.86105
Target:  5'- aGGcCAUUCGUcuGCcaaacGCCGcCGUGCGccGACCg -3'
miRNA:   3'- -CCuGUAAGCG--CG-----UGGC-GCACGC--UUGG- -5'
22883 5' -54.1 NC_005137.2 + 98438 0.67 0.936908
Target:  5'- uGGCGguuaaaGCGCaagcaGCCGCGUGCacGGCCg -3'
miRNA:   3'- cCUGUaag---CGCG-----UGGCGCACGc-UUGG- -5'
22883 5' -54.1 NC_005137.2 + 98027 0.68 0.890069
Target:  5'- -uGCAcgUCGgGCGCUGCGaGCGggUCc -3'
miRNA:   3'- ccUGUa-AGCgCGUGGCGCaCGCuuGG- -5'
22883 5' -54.1 NC_005137.2 + 96919 0.7 0.828681
Target:  5'- aGGCuauuuguUUCGCGC-CCGCGUGUgcauGAACa -3'
miRNA:   3'- cCUGu------AAGCGCGuGGCGCACG----CUUGg -5'
22883 5' -54.1 NC_005137.2 + 96146 0.68 0.890069
Target:  5'- -cGCA-UCGCGUugcCCGcCGUGCGGuACCa -3'
miRNA:   3'- ccUGUaAGCGCGu--GGC-GCACGCU-UGG- -5'
22883 5' -54.1 NC_005137.2 + 95908 0.66 0.95455
Target:  5'- -cGCGUUUGCGCcaaacaGCCGCGUGUa---- -3'
miRNA:   3'- ccUGUAAGCGCG------UGGCGCACGcuugg -5'
22883 5' -54.1 NC_005137.2 + 95514 0.72 0.705316
Target:  5'- uGACGUggccgguggcgacUUGCGCugCGUGUGCGAcgaagGCUa -3'
miRNA:   3'- cCUGUA-------------AGCGCGugGCGCACGCU-----UGG- -5'
22883 5' -54.1 NC_005137.2 + 94485 0.69 0.853256
Target:  5'- -uGCcgUCGUGCA-CGUGcGCGAACCc -3'
miRNA:   3'- ccUGuaAGCGCGUgGCGCaCGCUUGG- -5'
22883 5' -54.1 NC_005137.2 + 93465 0.66 0.941676
Target:  5'- cGGGCAcggUGCGCGCCaGCGccGUuuGCCg -3'
miRNA:   3'- -CCUGUaa-GCGCGUGG-CGCa-CGcuUGG- -5'
22883 5' -54.1 NC_005137.2 + 88498 0.75 0.542656
Target:  5'- uGGACGgaaugUCGCcgcgcagcaaGCGCCGUGUGCGuucCCa -3'
miRNA:   3'- -CCUGUa----AGCG----------CGUGGCGCACGCuu-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.