Results 1 - 20 of 72 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22883 | 5' | -54.1 | NC_005137.2 | + | 95908 | 0.66 | 0.95455 |
Target: 5'- -cGCGUUUGCGCcaaacaGCCGCGUGUa---- -3' miRNA: 3'- ccUGUAAGCGCG------UGGCGCACGcuugg -5' |
|||||||
22883 | 5' | -54.1 | NC_005137.2 | + | 14711 | 0.67 | 0.915414 |
Target: 5'- cGGACAUUUgGCGU---GCGUGCuGGCCg -3' miRNA: 3'- -CCUGUAAG-CGCGuggCGCACGcUUGG- -5' |
|||||||
22883 | 5' | -54.1 | NC_005137.2 | + | 102925 | 0.68 | 0.890069 |
Target: 5'- cGGCAggC-CGCGCUGCGUGUacAGCCg -3' miRNA: 3'- cCUGUaaGcGCGUGGCGCACGc-UUGG- -5' |
|||||||
22883 | 5' | -54.1 | NC_005137.2 | + | 67076 | 1.15 | 0.00183 |
Target: 5'- gGGACAUUCGCGCACCGCGUGCGAACCg -3' miRNA: 3'- -CCUGUAAGCGCGUGGCGCACGCUUGG- -5' |
|||||||
22883 | 5' | -54.1 | NC_005137.2 | + | 1846 | 0.66 | 0.950495 |
Target: 5'- cGACGa--GUGCACCGuCGUcGCGGcGCCu -3' miRNA: 3'- cCUGUaagCGCGUGGC-GCA-CGCU-UGG- -5' |
|||||||
22883 | 5' | -54.1 | NC_005137.2 | + | 20432 | 0.66 | 0.946204 |
Target: 5'- aGGAUGggCGCGCcaagaCGCagGUGCGGGCg -3' miRNA: 3'- -CCUGUaaGCGCGug---GCG--CACGCUUGg -5' |
|||||||
22883 | 5' | -54.1 | NC_005137.2 | + | 21584 | 0.66 | 0.941676 |
Target: 5'- uGGGC---CGCGCauagGCCGCGguuuUGaCGAGCCc -3' miRNA: 3'- -CCUGuaaGCGCG----UGGCGC----AC-GCUUGG- -5' |
|||||||
22883 | 5' | -54.1 | NC_005137.2 | + | 98438 | 0.67 | 0.936908 |
Target: 5'- uGGCGguuaaaGCGCaagcaGCCGCGUGCacGGCCg -3' miRNA: 3'- cCUGUaag---CGCG-----UGGCGCACGc-UUGG- -5' |
|||||||
22883 | 5' | -54.1 | NC_005137.2 | + | 112658 | 0.67 | 0.936418 |
Target: 5'- cGACAaaUUCGCGCACUGcCGUcucguagauuuugGCGu-CCg -3' miRNA: 3'- cCUGU--AAGCGCGUGGC-GCA-------------CGCuuGG- -5' |
|||||||
22883 | 5' | -54.1 | NC_005137.2 | + | 22105 | 0.67 | 0.915414 |
Target: 5'- -aGCGUUCGUGCggccuuguaagaACCGCGUcaaGCGuuGCCc -3' miRNA: 3'- ccUGUAAGCGCG------------UGGCGCA---CGCu-UGG- -5' |
|||||||
22883 | 5' | -54.1 | NC_005137.2 | + | 78213 | 0.67 | 0.931899 |
Target: 5'- --uUAUUaCGCGCACuUGCauaaUGCGAACCa -3' miRNA: 3'- ccuGUAA-GCGCGUG-GCGc---ACGCUUGG- -5' |
|||||||
22883 | 5' | -54.1 | NC_005137.2 | + | 35407 | 0.67 | 0.936908 |
Target: 5'- -aGCAcgUCGCGCACaGUGcGCGGGCg -3' miRNA: 3'- ccUGUa-AGCGCGUGgCGCaCGCUUGg -5' |
|||||||
22883 | 5' | -54.1 | NC_005137.2 | + | 18604 | 0.66 | 0.95455 |
Target: 5'- -cACAaUgGCGCGCCGUGcGCGAucGCg -3' miRNA: 3'- ccUGUaAgCGCGUGGCGCaCGCU--UGg -5' |
|||||||
22883 | 5' | -54.1 | NC_005137.2 | + | 99363 | 0.67 | 0.921151 |
Target: 5'- -aGCGUggUCGCGUccGCgCGCGUGCacuGACCg -3' miRNA: 3'- ccUGUA--AGCGCG--UG-GCGCACGc--UUGG- -5' |
|||||||
22883 | 5' | -54.1 | NC_005137.2 | + | 50760 | 0.66 | 0.953358 |
Target: 5'- cGGCGUUCGCGCcgucaucaaacgcaACCGCGc---AGCCg -3' miRNA: 3'- cCUGUAAGCGCG--------------UGGCGCacgcUUGG- -5' |
|||||||
22883 | 5' | -54.1 | NC_005137.2 | + | 5884 | 0.67 | 0.936908 |
Target: 5'- aGACGUUCGaGCGgCGCG-GCccGCCg -3' miRNA: 3'- cCUGUAAGCgCGUgGCGCaCGcuUGG- -5' |
|||||||
22883 | 5' | -54.1 | NC_005137.2 | + | 34700 | 0.67 | 0.915414 |
Target: 5'- -cACAcUUGCGCGCCGgCGUgucgGCGAAUg -3' miRNA: 3'- ccUGUaAGCGCGUGGC-GCA----CGCUUGg -5' |
|||||||
22883 | 5' | -54.1 | NC_005137.2 | + | 67707 | 0.68 | 0.902581 |
Target: 5'- aGGGCGcgcgUUGUGC-CCGCGaGCGAcggcgagACCg -3' miRNA: 3'- -CCUGUa---AGCGCGuGGCGCaCGCU-------UGG- -5' |
|||||||
22883 | 5' | -54.1 | NC_005137.2 | + | 58671 | 0.66 | 0.950495 |
Target: 5'- cGGcGCAgcUCGCGCAauUCGCGUuCGGACa -3' miRNA: 3'- -CC-UGUa-AGCGCGU--GGCGCAcGCUUGg -5' |
|||||||
22883 | 5' | -54.1 | NC_005137.2 | + | 63940 | 0.66 | 0.946204 |
Target: 5'- aGAUgAUUUGCGCACCGUGUugacGCGcuuGCa -3' miRNA: 3'- cCUG-UAAGCGCGUGGCGCA----CGCu--UGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home