miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22883 5' -54.1 NC_005137.2 + 38657 0.67 0.931899
Target:  5'- uGGGCAggCGCGCGuuGCG-GCa---- -3'
miRNA:   3'- -CCUGUaaGCGCGUggCGCaCGcuugg -5'
22883 5' -54.1 NC_005137.2 + 11145 0.67 0.931899
Target:  5'- -aACGUUUGUugGCugCGCGUGCc-ACCa -3'
miRNA:   3'- ccUGUAAGCG--CGugGCGCACGcuUGG- -5'
22883 5' -54.1 NC_005137.2 + 99363 0.67 0.921151
Target:  5'- -aGCGUggUCGCGUccGCgCGCGUGCacuGACCg -3'
miRNA:   3'- ccUGUA--AGCGCG--UG-GCGCACGc--UUGG- -5'
22883 5' -54.1 NC_005137.2 + 2462 0.67 0.921151
Target:  5'- cGACcacucuaUCGCGCgcuauuuaugcGCCGCGUGCGGcaugguGCUg -3'
miRNA:   3'- cCUGua-----AGCGCG-----------UGGCGCACGCU------UGG- -5'
22883 5' -54.1 NC_005137.2 + 63923 0.67 0.921151
Target:  5'- cGGACgGUUCGCaCGCgGUGcGCGAAUg -3'
miRNA:   3'- -CCUG-UAAGCGcGUGgCGCaCGCUUGg -5'
22883 5' -54.1 NC_005137.2 + 112850 0.67 0.915414
Target:  5'- -aGCcUUCGCGCAUCGC-UGCGGcUCg -3'
miRNA:   3'- ccUGuAAGCGCGUGGCGcACGCUuGG- -5'
22883 5' -54.1 NC_005137.2 + 34700 0.67 0.915414
Target:  5'- -cACAcUUGCGCGCCGgCGUgucgGCGAAUg -3'
miRNA:   3'- ccUGUaAGCGCGUGGC-GCA----CGCUUGg -5'
22883 5' -54.1 NC_005137.2 + 22105 0.67 0.915414
Target:  5'- -aGCGUUCGUGCggccuuguaagaACCGCGUcaaGCGuuGCCc -3'
miRNA:   3'- ccUGUAAGCGCG------------UGGCGCA---CGCu-UGG- -5'
22883 5' -54.1 NC_005137.2 + 14711 0.67 0.915414
Target:  5'- cGGACAUUUgGCGU---GCGUGCuGGCCg -3'
miRNA:   3'- -CCUGUAAG-CGCGuggCGCACGcUUGG- -5'
22883 5' -54.1 NC_005137.2 + 63220 0.67 0.915414
Target:  5'- aGGCAUUaUGCGCA-CGuCGUGCGGcCCc -3'
miRNA:   3'- cCUGUAA-GCGCGUgGC-GCACGCUuGG- -5'
22883 5' -54.1 NC_005137.2 + 64524 0.68 0.907594
Target:  5'- cGGCGUgUGCGCACCGgcaacguugaccaaCGUGCGcACg -3'
miRNA:   3'- cCUGUAaGCGCGUGGC--------------GCACGCuUGg -5'
22883 5' -54.1 NC_005137.2 + 124971 0.68 0.903216
Target:  5'- cGGugAUggggCGCuGCGCUGCGUuggaaaucggGCGGgauGCCg -3'
miRNA:   3'- -CCugUAa---GCG-CGUGGCGCA----------CGCU---UGG- -5'
22883 5' -54.1 NC_005137.2 + 33937 0.68 0.903216
Target:  5'- cGGCAUUCGCGCGCaCGUaUuuGAACa -3'
miRNA:   3'- cCUGUAAGCGCGUG-GCGcAcgCUUGg -5'
22883 5' -54.1 NC_005137.2 + 42135 0.68 0.903216
Target:  5'- -uGCGUUCGaCGCguggaACCGcCGUG-GAACCa -3'
miRNA:   3'- ccUGUAAGC-GCG-----UGGC-GCACgCUUGG- -5'
22883 5' -54.1 NC_005137.2 + 75979 0.68 0.903216
Target:  5'- -cGCGUUgGUGCACgGCGcaCGGGCCa -3'
miRNA:   3'- ccUGUAAgCGCGUGgCGCacGCUUGG- -5'
22883 5' -54.1 NC_005137.2 + 67707 0.68 0.902581
Target:  5'- aGGGCGcgcgUUGUGC-CCGCGaGCGAcggcgagACCg -3'
miRNA:   3'- -CCUGUa---AGCGCGuGGCGCaCGCU-------UGG- -5'
22883 5' -54.1 NC_005137.2 + 96146 0.68 0.890069
Target:  5'- -cGCA-UCGCGUugcCCGcCGUGCGGuACCa -3'
miRNA:   3'- ccUGUaAGCGCGu--GGC-GCACGCU-UGG- -5'
22883 5' -54.1 NC_005137.2 + 98027 0.68 0.890069
Target:  5'- -uGCAcgUCGgGCGCUGCGaGCGggUCc -3'
miRNA:   3'- ccUGUa-AGCgCGUGGCGCaCGCuuGG- -5'
22883 5' -54.1 NC_005137.2 + 102925 0.68 0.890069
Target:  5'- cGGCAggC-CGCGCUGCGUGUacAGCCg -3'
miRNA:   3'- cCUGUaaGcGCGUGGCGCACGc-UUGG- -5'
22883 5' -54.1 NC_005137.2 + 130620 0.68 0.885249
Target:  5'- cGGACA--CGCGCGCCGacaaagccagcaaaaGCGAGCUc -3'
miRNA:   3'- -CCUGUaaGCGCGUGGCgca------------CGCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.