miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22896 5' -52 NC_005137.2 + 128571 0.66 0.975699
Target:  5'- cGGGCGCGGGCA------CGUCGgCCa -3'
miRNA:   3'- aUUUGUGCCCGUuguuagGCAGCgGG- -5'
22896 5' -52 NC_005137.2 + 123045 0.68 0.938224
Target:  5'- gGAACACGGGCcgcCGGUCgagGUCGCg- -3'
miRNA:   3'- aUUUGUGCCCGuu-GUUAGg--CAGCGgg -5'
22896 5' -52 NC_005137.2 + 122948 0.72 0.78074
Target:  5'- --cGCACGGGCcgAGCAGgaacgCCGUCaGCaCCg -3'
miRNA:   3'- auuUGUGCCCG--UUGUUa----GGCAG-CG-GG- -5'
22896 5' -52 NC_005137.2 + 122423 0.74 0.679097
Target:  5'- aAGACGCGGGUuuugcuGCAGcgcgcggucuacUCCGUCGgCCg -3'
miRNA:   3'- aUUUGUGCCCGu-----UGUU------------AGGCAGCgGG- -5'
22896 5' -52 NC_005137.2 + 112700 0.76 0.541883
Target:  5'- uUAAACGCGGGC-ACGucGUCCa-CGCCCa -3'
miRNA:   3'- -AUUUGUGCCCGuUGU--UAGGcaGCGGG- -5'
22896 5' -52 NC_005137.2 + 108545 0.73 0.720823
Target:  5'- gUGAGCGCGGuGCAGCcgacgGAgcgCaCGUUGCCCa -3'
miRNA:   3'- -AUUUGUGCC-CGUUG-----UUa--G-GCAGCGGG- -5'
22896 5' -52 NC_005137.2 + 106699 0.67 0.951993
Target:  5'- cGGACGCGGuggacuGCAACAAgCCGUCuGUCa -3'
miRNA:   3'- aUUUGUGCC------CGUUGUUaGGCAG-CGGg -5'
22896 5' -52 NC_005137.2 + 103110 0.68 0.943067
Target:  5'- --uGC-CGGGCGAUGAcCCGUgGCgCCg -3'
miRNA:   3'- auuUGuGCCCGUUGUUaGGCAgCG-GG- -5'
22896 5' -52 NC_005137.2 + 101353 0.76 0.541883
Target:  5'- cGAGUACGGGCAcuucaugugACGGUCCGUCcguuuuGCCCa -3'
miRNA:   3'- aUUUGUGCCCGU---------UGUUAGGCAG------CGGG- -5'
22896 5' -52 NC_005137.2 + 100264 0.66 0.975699
Target:  5'- --cGCACGGGCG-CGcGUCgCGgcauucaCGCCCa -3'
miRNA:   3'- auuUGUGCCCGUuGU-UAG-GCa------GCGGG- -5'
22896 5' -52 NC_005137.2 + 97988 0.67 0.96691
Target:  5'- cGGGCGCGcGGCGugGGUgCGccCGCCa -3'
miRNA:   3'- aUUUGUGC-CCGUugUUAgGCa-GCGGg -5'
22896 5' -52 NC_005137.2 + 96025 0.68 0.927768
Target:  5'- cGGACAUGGuGUuuCAAgccaCCGcCGCCCa -3'
miRNA:   3'- aUUUGUGCC-CGuuGUUa---GGCaGCGGG- -5'
22896 5' -52 NC_005137.2 + 95998 0.66 0.980521
Target:  5'- gUAAAUugaAUcGGCAuGCAggCCGUUGCCCg -3'
miRNA:   3'- -AUUUG---UGcCCGU-UGUuaGGCAGCGGG- -5'
22896 5' -52 NC_005137.2 + 95885 0.74 0.704253
Target:  5'- -cGACACGGGCAugGugcgucgcggugaccGUaCCGUUGCCa -3'
miRNA:   3'- auUUGUGCCCGUugU---------------UA-GGCAGCGGg -5'
22896 5' -52 NC_005137.2 + 95843 0.75 0.594239
Target:  5'- ----aGCGGGCGACGGaUUGUUGCCCg -3'
miRNA:   3'- auuugUGCCCGUUGUUaGGCAGCGGG- -5'
22896 5' -52 NC_005137.2 + 93461 0.67 0.963536
Target:  5'- --cAUACGGGC-ACGGUgCG-CGCCa -3'
miRNA:   3'- auuUGUGCCCGuUGUUAgGCaGCGGg -5'
22896 5' -52 NC_005137.2 + 87426 0.72 0.761234
Target:  5'- -uGACuuGGGCAACGAccaguacgcaUUCGUgCGCCCg -3'
miRNA:   3'- auUUGugCCCGUUGUU----------AGGCA-GCGGG- -5'
22896 5' -52 NC_005137.2 + 87193 0.81 0.338568
Target:  5'- cGGGCGCGGGCGGCugcucgugCCGUCGCUg -3'
miRNA:   3'- aUUUGUGCCCGUUGuua-----GGCAGCGGg -5'
22896 5' -52 NC_005137.2 + 86701 0.67 0.959929
Target:  5'- cUAAACGCGGGCGACGAagaCUua-GCCa -3'
miRNA:   3'- -AUUUGUGCCCGUUGUUa--GGcagCGGg -5'
22896 5' -52 NC_005137.2 + 79842 0.66 0.981393
Target:  5'- cAGGCACGGugucgcugcacaugcGCAGCAG-CUGUgGCCa -3'
miRNA:   3'- aUUUGUGCC---------------CGUUGUUaGGCAgCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.