miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22904 3' -52.6 NC_005137.2 + 31214 0.65 0.979923
Target:  5'- cGCGGCGAccUCGuGUaCAgauugauauaaagcGCUCGCGCgGCCa -3'
miRNA:   3'- -CGUUGCUa-AGC-CG-GU--------------UGAGCGUG-CGG- -5'
22904 3' -52.6 NC_005137.2 + 129502 0.67 0.952657
Target:  5'- aCAACGcgUCGGC--GC-CGCGCGgCg -3'
miRNA:   3'- cGUUGCuaAGCCGguUGaGCGUGCgG- -5'
22904 3' -52.6 NC_005137.2 + 40251 0.67 0.952657
Target:  5'- -gGAUGcaUUGGCCGugUgGCGCGCa -3'
miRNA:   3'- cgUUGCuaAGCCGGUugAgCGUGCGg -5'
22904 3' -52.6 NC_005137.2 + 25138 1.14 0.00268
Target:  5'- uGCAACGAUUCGGCCAACUCGCACGCCu -3'
miRNA:   3'- -CGUUGCUAAGCCGGUUGAGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 112529 0.66 0.975849
Target:  5'- -uGACG--UCGGCaCAGCcgCGCACuauGCCa -3'
miRNA:   3'- cgUUGCuaAGCCG-GUUGa-GCGUG---CGG- -5'
22904 3' -52.6 NC_005137.2 + 12506 0.66 0.974808
Target:  5'- -uGACGAUggaCGGUCGGuCUacggcgcacaugaGCACGCCa -3'
miRNA:   3'- cgUUGCUAa--GCCGGUU-GAg------------CGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 71066 0.66 0.970319
Target:  5'- uCAACGAggCGcGCCAGCUCa-GCGUa -3'
miRNA:   3'- cGUUGCUaaGC-CGGUUGAGcgUGCGg -5'
22904 3' -52.6 NC_005137.2 + 83538 0.66 0.970319
Target:  5'- uGCAAgGGggcucauggCGGCCAACgagCGCaauaACGCg -3'
miRNA:   3'- -CGUUgCUaa-------GCCGGUUGa--GCG----UGCGg -5'
22904 3' -52.6 NC_005137.2 + 100132 0.67 0.963593
Target:  5'- uGCGGCGcauuggcGUUCGGUCG---UGCACGCUu -3'
miRNA:   3'- -CGUUGC-------UAAGCCGGUugaGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 65796 0.67 0.956651
Target:  5'- aCAAgGGUUCGGCCAGCcCGCuuuuauugACGg- -3'
miRNA:   3'- cGUUgCUAAGCCGGUUGaGCG--------UGCgg -5'
22904 3' -52.6 NC_005137.2 + 128669 0.67 0.960409
Target:  5'- uGC-ACGuUUaCGGCCA---UGCACGCCu -3'
miRNA:   3'- -CGuUGCuAA-GCCGGUugaGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 58882 0.67 0.963936
Target:  5'- cGCAGCGuua-GGCgAA--CGUACGCCg -3'
miRNA:   3'- -CGUUGCuaagCCGgUUgaGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 103606 0.66 0.978312
Target:  5'- uGCAGCGGccgcuacuUUUGGCCGGacggCGUGCGUUu -3'
miRNA:   3'- -CGUUGCU--------AAGCCGGUUga--GCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 95577 0.67 0.956651
Target:  5'- gGCAGCGugUUGGCguuguaguuaaUGAUgggCGCGCGCCg -3'
miRNA:   3'- -CGUUGCuaAGCCG-----------GUUGa--GCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 54480 0.66 0.978312
Target:  5'- uUAGCGucaaaCuGCCGACggaagUGCACGCCg -3'
miRNA:   3'- cGUUGCuaa--GcCGGUUGa----GCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 11301 0.66 0.967237
Target:  5'- cGCGGCGGgaugCGuacgugcuaaGCUGugUgCGCGCGCCg -3'
miRNA:   3'- -CGUUGCUaa--GC----------CGGUugA-GCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 82238 0.67 0.956651
Target:  5'- uGCGGCGccgCGuCCAACgaUCGCGcCGCCu -3'
miRNA:   3'- -CGUUGCuaaGCcGGUUG--AGCGU-GCGG- -5'
22904 3' -52.6 NC_005137.2 + 108548 0.67 0.952657
Target:  5'- aGC-GCGGUgCaGCCGACggagCGCACGUUg -3'
miRNA:   3'- -CGuUGCUAaGcCGGUUGa---GCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 12954 0.66 0.975849
Target:  5'- cGCuGCGGcgCGGCCAcaaACgguugGCACGCa -3'
miRNA:   3'- -CGuUGCUaaGCCGGU---UGag---CGUGCGg -5'
22904 3' -52.6 NC_005137.2 + 74488 0.66 0.970319
Target:  5'- aCGGCGcguuugCGGCCAACgua-ACGCCg -3'
miRNA:   3'- cGUUGCuaa---GCCGGUUGagcgUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.