Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 13423 | 1.11 | 0.000665 |
Target: 5'- uACACGUCGCCCGUCAGCCGCACCGGCg -3' miRNA: 3'- -UGUGCAGCGGGCAGUCGGCGUGGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 22452 | 0.81 | 0.083192 |
Target: 5'- gGCaACGUgCGCuCCGUCGGCUGCACCGcGCu -3' miRNA: 3'- -UG-UGCA-GCG-GGCAGUCGGCGUGGC-CG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 42973 | 0.77 | 0.168114 |
Target: 5'- cCACGUgguggccCGCCuCGgcggUGGCCGCGCCGGCa -3' miRNA: 3'- uGUGCA-------GCGG-GCa---GUCGGCGUGGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 74418 | 0.77 | 0.168526 |
Target: 5'- aGCACGUCGCCCGUCGcGUCGgGucccauaaCGGCg -3' miRNA: 3'- -UGUGCAGCGGGCAGU-CGGCgUg-------GCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 37667 | 0.74 | 0.230395 |
Target: 5'- aACGCGUCGCCgGUCAGCacgaugcuaGCGCuCaGCg -3' miRNA: 3'- -UGUGCAGCGGgCAGUCGg--------CGUG-GcCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 85978 | 0.74 | 0.235874 |
Target: 5'- -gACGg-GCCCGUaaagauauuugUGGCCGCGCCGGCc -3' miRNA: 3'- ugUGCagCGGGCA-----------GUCGGCGUGGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 35356 | 0.73 | 0.27107 |
Target: 5'- cGCAC-UUGCCCGUCGG-CGCA-CGGCg -3' miRNA: 3'- -UGUGcAGCGGGCAGUCgGCGUgGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 67367 | 0.73 | 0.27107 |
Target: 5'- gACGCGaugCGCgaCCGUC-GCCGCGgCGGCg -3' miRNA: 3'- -UGUGCa--GCG--GGCAGuCGGCGUgGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 31958 | 0.73 | 0.27107 |
Target: 5'- aGCACGuUCGCCaaacugCAGCCGUacacuauaaauuACCGGCg -3' miRNA: 3'- -UGUGC-AGCGGgca---GUCGGCG------------UGGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 18243 | 0.72 | 0.338893 |
Target: 5'- uGCGCGUCGUUCGUacuGCgGCGCCGcGUc -3' miRNA: 3'- -UGUGCAGCGGGCAgu-CGgCGUGGC-CG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 27391 | 0.71 | 0.346315 |
Target: 5'- cGCACGcCGUCCGgccaaaaguagCGGCCGCugCaGCg -3' miRNA: 3'- -UGUGCaGCGGGCa----------GUCGGCGugGcCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 88814 | 0.71 | 0.377156 |
Target: 5'- cGCGCGUCGCguccCUGUCGGCggaCGCgacGCUGGCc -3' miRNA: 3'- -UGUGCAGCG----GGCAGUCG---GCG---UGGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 55358 | 0.7 | 0.435394 |
Target: 5'- uGCACGU-GCCCcUUGGCCaCGCUGGCc -3' miRNA: 3'- -UGUGCAgCGGGcAGUCGGcGUGGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 89354 | 0.7 | 0.40147 |
Target: 5'- gGCACGUCGCUCGUCgAGgaUGCAuCCaGCa -3' miRNA: 3'- -UGUGCAGCGGGCAG-UCg-GCGU-GGcCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 35510 | 0.7 | 0.418223 |
Target: 5'- cCACGUCagcgaugcGCCCGUgCGGCgCGCauccgACCGGUa -3' miRNA: 3'- uGUGCAG--------CGGGCA-GUCG-GCG-----UGGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 69606 | 0.7 | 0.413152 |
Target: 5'- aACGCGgCGUuucuuaCGUCGGCCGCcaacgccaucaacucGCCGGCc -3' miRNA: 3'- -UGUGCaGCGg-----GCAGUCGGCG---------------UGGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 123174 | 0.69 | 0.452967 |
Target: 5'- uUAUuUUGCCUGUUuGCCGC-CCGGCa -3' miRNA: 3'- uGUGcAGCGGGCAGuCGGCGuGGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 35549 | 0.69 | 0.461896 |
Target: 5'- aACACGgCGCuuGUCaAGacaCGCaccGCCGGCg -3' miRNA: 3'- -UGUGCaGCGggCAG-UCg--GCG---UGGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 100140 | 0.69 | 0.4985 |
Target: 5'- gGCACaGcUCGCCCacGUaCGGgCGCGCCGGg -3' miRNA: 3'- -UGUG-C-AGCGGG--CA-GUCgGCGUGGCCg -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 120779 | 0.69 | 0.470917 |
Target: 5'- aACGCGUacaccaGCuuGUgaCAGCCcaGCGCCGGUc -3' miRNA: 3'- -UGUGCAg-----CGggCA--GUCGG--CGUGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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