Results 41 - 60 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22911 | 3' | -49.8 | NC_005137.2 | + | 2254 | 0.74 | 0.8308 |
Target: 5'- cGCGAUUGCG-CGCGuuGAUuGACGg-- -3' miRNA: 3'- -CGUUAACGCuGCGCggCUA-UUGCacg -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 112013 | 0.74 | 0.821957 |
Target: 5'- aGCAAacguaccGUGACGCGCUGc-GACGUGCu -3' miRNA: 3'- -CGUUaa-----CGCUGCGCGGCuaUUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 17302 | 0.75 | 0.784794 |
Target: 5'- cGCAGgacauUGACGCGCUGugcGACGUGCg -3' miRNA: 3'- -CGUUaac--GCUGCGCGGCua-UUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 79736 | 0.75 | 0.765273 |
Target: 5'- cGCaAAUUGCGACGCaaugGCCGcguUAGCGUugGCg -3' miRNA: 3'- -CG-UUAACGCUGCG----CGGCu--AUUGCA--CG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 124950 | 0.77 | 0.671176 |
Target: 5'- -gGGUUGCGAUgaacgcgGCGCCGGUGAUGggGCg -3' miRNA: 3'- cgUUAACGCUG-------CGCGGCUAUUGCa-CG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 100081 | 0.71 | 0.930738 |
Target: 5'- -----cGCGGCGCGCgGc--ACGUGCu -3' miRNA: 3'- cguuaaCGCUGCGCGgCuauUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 41832 | 0.71 | 0.935987 |
Target: 5'- cGCGuUUGUua-GCGCUGGUGAgGUGCa -3' miRNA: 3'- -CGUuAACGcugCGCGGCUAUUgCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 110419 | 0.69 | 0.971882 |
Target: 5'- cGCAGcugGCaacgGGCGCGaCGGUGAgCGUGCa -3' miRNA: 3'- -CGUUaa-CG----CUGCGCgGCUAUU-GCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 41667 | 0.69 | 0.971882 |
Target: 5'- -----aGCGACGUGCCGAgcucGACGa-- -3' miRNA: 3'- cguuaaCGCUGCGCGGCUa---UUGCacg -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 18562 | 0.69 | 0.96885 |
Target: 5'- cGCAucguGUUGCGAcCGCGCCGuuucaauuGCGagauUGCc -3' miRNA: 3'- -CGU----UAACGCU-GCGCGGCuau-----UGC----ACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 106398 | 0.69 | 0.965593 |
Target: 5'- ---uUUGaCGACGCGUCGGUcAUGUGg -3' miRNA: 3'- cguuAAC-GCUGCGCGGCUAuUGCACg -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 31421 | 0.69 | 0.965593 |
Target: 5'- gGCAGcUGCacguCGaCGCCGcUAAUGUGCa -3' miRNA: 3'- -CGUUaACGcu--GC-GCGGCuAUUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 17470 | 0.7 | 0.962103 |
Target: 5'- cGCAgg-GUGugGgGCUGGUgGugGUGCa -3' miRNA: 3'- -CGUuaaCGCugCgCGGCUA-UugCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 69279 | 0.7 | 0.959894 |
Target: 5'- cGCGGUcGCGGCGCGUuuaggcguaauuuuaUGAU--CGUGCa -3' miRNA: 3'- -CGUUAaCGCUGCGCG---------------GCUAuuGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 62276 | 0.7 | 0.958374 |
Target: 5'- cGCu-UUGCGAacuaguaacgguCGCGCUGGUGG-GUGCa -3' miRNA: 3'- -CGuuAACGCU------------GCGCGGCUAUUgCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 7447 | 0.7 | 0.958374 |
Target: 5'- uGCAAUcGCGAgGCacGCUGuuUGugGUGCa -3' miRNA: 3'- -CGUUAaCGCUgCG--CGGCu-AUugCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 95506 | 0.7 | 0.95018 |
Target: 5'- cGCAuc-GCuGACGUgGCCGGUGGCGacuUGCg -3' miRNA: 3'- -CGUuaaCG-CUGCG-CGGCUAUUGC---ACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 105713 | 0.7 | 0.95018 |
Target: 5'- ---uUUGCGACcUGCUGuugGGCGUGCa -3' miRNA: 3'- cguuAACGCUGcGCGGCua-UUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 122060 | 0.71 | 0.940976 |
Target: 5'- -aAAUUGCGGCGUGuCCGGgucGGCG-GCc -3' miRNA: 3'- cgUUAACGCUGCGC-GGCUa--UUGCaCG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 63114 | 0.71 | 0.940976 |
Target: 5'- ---cUUGCGcuuCGCGCCGGUcGCG-GCu -3' miRNA: 3'- cguuAACGCu--GCGCGGCUAuUGCaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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