miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22914 5' -49.2 NC_005137.2 + 129207 1.08 0.011501
Target:  5'- cAACGCGCACAAUUUUAGCGCCGAUGAa -3'
miRNA:   3'- -UUGCGCGUGUUAAAAUCGCGGCUACU- -5'
22914 5' -49.2 NC_005137.2 + 41822 0.79 0.543528
Target:  5'- cGGCGCGcCACGcgUuugUUAGCGCUGGUGAg -3'
miRNA:   3'- -UUGCGC-GUGUuaA---AAUCGCGGCUACU- -5'
22914 5' -49.2 NC_005137.2 + 102278 0.75 0.769962
Target:  5'- gAACGUGUGgAAUggUGGCGUCGGUGAu -3'
miRNA:   3'- -UUGCGCGUgUUAaaAUCGCGGCUACU- -5'
22914 5' -49.2 NC_005137.2 + 33132 0.73 0.845363
Target:  5'- uGCGCGCACuuggucAGCGCCgGGUGGc -3'
miRNA:   3'- uUGCGCGUGuuaaaaUCGCGG-CUACU- -5'
22914 5' -49.2 NC_005137.2 + 1690 0.72 0.870216
Target:  5'- cAACGCGCGCAAUcUUAGUcCCGAc-- -3'
miRNA:   3'- -UUGCGCGUGUUAaAAUCGcGGCUacu -5'
22914 5' -49.2 NC_005137.2 + 29996 0.72 0.878016
Target:  5'- --aGCGCGCGAcccuuUUUUAGCGCgGcgGAa -3'
miRNA:   3'- uugCGCGUGUU-----AAAAUCGCGgCuaCU- -5'
22914 5' -49.2 NC_005137.2 + 63420 0.71 0.925261
Target:  5'- -cCGUGUugGAgUUUGGCGCCGAa-- -3'
miRNA:   3'- uuGCGCGugUUaAAAUCGCGGCUacu -5'
22914 5' -49.2 NC_005137.2 + 29041 0.71 0.93092
Target:  5'- uAGCGUGCGCGcgUUUAGUaGCC-AUGAc -3'
miRNA:   3'- -UUGCGCGUGUuaAAAUCG-CGGcUACU- -5'
22914 5' -49.2 NC_005137.2 + 2401 0.7 0.955108
Target:  5'- cAACGCGCGCAAUc---GCGCCaaAUGGg -3'
miRNA:   3'- -UUGCGCGUGUUAaaauCGCGGc-UACU- -5'
22914 5' -49.2 NC_005137.2 + 28520 0.7 0.955108
Target:  5'- uGACGCGC---GUUUcGGCGuuGAUGAc -3'
miRNA:   3'- -UUGCGCGuguUAAAaUCGCggCUACU- -5'
22914 5' -49.2 NC_005137.2 + 110985 0.69 0.966452
Target:  5'- cAGCGCGCACGAcucUUgcGCGUCGgcGGg -3'
miRNA:   3'- -UUGCGCGUGUUa--AAauCGCGGCuaCU- -5'
22914 5' -49.2 NC_005137.2 + 130475 0.69 0.969737
Target:  5'- cAACGCGCuGCGAUcggUAGCGCCuuUGc -3'
miRNA:   3'- -UUGCGCG-UGUUAaa-AUCGCGGcuACu -5'
22914 5' -49.2 NC_005137.2 + 124933 0.69 0.971896
Target:  5'- uGAUGUGCuugaucgccggguuGCGAUgaacgcGGCGCCGGUGAu -3'
miRNA:   3'- -UUGCGCG--------------UGUUAaaa---UCGCGGCUACU- -5'
22914 5' -49.2 NC_005137.2 + 58629 0.69 0.972786
Target:  5'- uAACGcCGCGCAAU--UAGCcGCCGAc-- -3'
miRNA:   3'- -UUGC-GCGUGUUAaaAUCG-CGGCUacu -5'
22914 5' -49.2 NC_005137.2 + 123105 0.69 0.973078
Target:  5'- aAAUGCGCAauggagcuGCGCCGGUGu -3'
miRNA:   3'- -UUGCGCGUguuaaaauCGCGGCUACu -5'
22914 5' -49.2 NC_005137.2 + 77535 0.68 0.975334
Target:  5'- uGugGCGCACucGUUgcaagcgguccagUUAGCGCCGuacuuUGAc -3'
miRNA:   3'- -UugCGCGUGu-UAA-------------AAUCGCGGCu----ACU- -5'
22914 5' -49.2 NC_005137.2 + 100082 0.68 0.978206
Target:  5'- uGCGUGCGCGu------CGCCGAUGAu -3'
miRNA:   3'- uUGCGCGUGUuaaaaucGCGGCUACU- -5'
22914 5' -49.2 NC_005137.2 + 51850 0.68 0.978206
Target:  5'- cGACGCGCGCAAc---GGUGCCGc--- -3'
miRNA:   3'- -UUGCGCGUGUUaaaaUCGCGGCuacu -5'
22914 5' -49.2 NC_005137.2 + 93681 0.68 0.978206
Target:  5'- aGAUGCGCaACAGgcccAGCGCCGGa-- -3'
miRNA:   3'- -UUGCGCG-UGUUaaaaUCGCGGCUacu -5'
22914 5' -49.2 NC_005137.2 + 38803 0.68 0.980596
Target:  5'- cAACGCGCGCcugcccAGCGUCGAUu- -3'
miRNA:   3'- -UUGCGCGUGuuaaaaUCGCGGCUAcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.