miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22914 5' -49.2 NC_005137.2 + 41822 0.79 0.543528
Target:  5'- cGGCGCGcCACGcgUuugUUAGCGCUGGUGAg -3'
miRNA:   3'- -UUGCGC-GUGUuaA---AAUCGCGGCUACU- -5'
22914 5' -49.2 NC_005137.2 + 98365 0.66 0.995822
Target:  5'- -uUGUGCGCcggUUUGGCGCCGucgcGAc -3'
miRNA:   3'- uuGCGCGUGuuaAAAUCGCGGCua--CU- -5'
22914 5' -49.2 NC_005137.2 + 2473 0.66 0.995822
Target:  5'- -uCGCGCGCuAUUUauGCGCCGcGUGc -3'
miRNA:   3'- uuGCGCGUGuUAAAauCGCGGC-UACu -5'
22914 5' -49.2 NC_005137.2 + 128665 0.66 0.99509
Target:  5'- gAACGCGCGUAAUUgu-GaCGCCGAa-- -3'
miRNA:   3'- -UUGCGCGUGUUAAaauC-GCGGCUacu -5'
22914 5' -49.2 NC_005137.2 + 44037 0.66 0.993314
Target:  5'- uGCGCGCACGGUUUUGccuGUGCUa---- -3'
miRNA:   3'- uUGCGCGUGUUAAAAU---CGCGGcuacu -5'
22914 5' -49.2 NC_005137.2 + 130950 0.67 0.991908
Target:  5'- cGACGCGCGCGcUUUUAuacaagcgguugacGCGcCCGAaGAc -3'
miRNA:   3'- -UUGCGCGUGUuAAAAU--------------CGC-GGCUaCU- -5'
22914 5' -49.2 NC_005137.2 + 117190 0.67 0.991058
Target:  5'- uACGaCGCACAAUUUcc-CGCCGAUu- -3'
miRNA:   3'- uUGC-GCGUGUUAAAaucGCGGCUAcu -5'
22914 5' -49.2 NC_005137.2 + 90505 0.67 0.990276
Target:  5'- aAGCGgGCACAAUggaccaugauuuggUUAGCGuuGgcGAg -3'
miRNA:   3'- -UUGCgCGUGUUAa-------------AAUCGCggCuaCU- -5'
22914 5' -49.2 NC_005137.2 + 61542 0.67 0.989725
Target:  5'- cGCGCGCGCGAUUUUuuuCGuuGAg-- -3'
miRNA:   3'- uUGCGCGUGUUAAAAuc-GCggCUacu -5'
22914 5' -49.2 NC_005137.2 + 54746 0.67 0.989725
Target:  5'- uGGCGCGCACAAc-----CGCCGAaaUGGa -3'
miRNA:   3'- -UUGCGCGUGUUaaaaucGCGGCU--ACU- -5'
22914 5' -49.2 NC_005137.2 + 1690 0.72 0.870216
Target:  5'- cAACGCGCGCAAUcUUAGUcCCGAc-- -3'
miRNA:   3'- -UUGCGCGUGUUAaAAUCGcGGCUacu -5'
22914 5' -49.2 NC_005137.2 + 28520 0.7 0.955108
Target:  5'- uGACGCGC---GUUUcGGCGuuGAUGAc -3'
miRNA:   3'- -UUGCGCGuguUAAAaUCGCggCUACU- -5'
22914 5' -49.2 NC_005137.2 + 124933 0.69 0.971896
Target:  5'- uGAUGUGCuugaucgccggguuGCGAUgaacgcGGCGCCGGUGAu -3'
miRNA:   3'- -UUGCGCG--------------UGUUAaaa---UCGCGGCUACU- -5'
22914 5' -49.2 NC_005137.2 + 123105 0.69 0.973078
Target:  5'- aAAUGCGCAauggagcuGCGCCGGUGu -3'
miRNA:   3'- -UUGCGCGUguuaaaauCGCGGCUACu -5'
22914 5' -49.2 NC_005137.2 + 93681 0.68 0.978206
Target:  5'- aGAUGCGCaACAGgcccAGCGCCGGa-- -3'
miRNA:   3'- -UUGCGCG-UGUUaaaaUCGCGGCUacu -5'
22914 5' -49.2 NC_005137.2 + 60512 0.67 0.988242
Target:  5'- cACGUGCucaAAUUgUGGCGCUGAUuGAa -3'
miRNA:   3'- uUGCGCGug-UUAAaAUCGCGGCUA-CU- -5'
22914 5' -49.2 NC_005137.2 + 129207 1.08 0.011501
Target:  5'- cAACGCGCACAAUUUUAGCGCCGAUGAa -3'
miRNA:   3'- -UUGCGCGUGUUAAAAUCGCGGCUACU- -5'
22914 5' -49.2 NC_005137.2 + 19691 0.66 0.995822
Target:  5'- cGGCGgGCACAgaacgccuucGUUUgccUGGCGCCGuuuccguUGAa -3'
miRNA:   3'- -UUGCgCGUGU----------UAAA---AUCGCGGCu------ACU- -5'
22914 5' -49.2 NC_005137.2 + 2627 0.66 0.993314
Target:  5'- cACGCgGCGCAuaaaUAGCGCgCGAUaGAg -3'
miRNA:   3'- uUGCG-CGUGUuaaaAUCGCG-GCUA-CU- -5'
22914 5' -49.2 NC_005137.2 + 128863 0.67 0.991552
Target:  5'- gGGCGUGCACGAcggcacguuggaauaUUUUAGCcCCGAa-- -3'
miRNA:   3'- -UUGCGCGUGUU---------------AAAAUCGcGGCUacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.