Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 51850 | 0.68 | 0.978206 |
Target: 5'- cGACGCGCGCAAc---GGUGCCGc--- -3' miRNA: 3'- -UUGCGCGUGUUaaaaUCGCGGCuacu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 100082 | 0.68 | 0.978206 |
Target: 5'- uGCGUGCGCGu------CGCCGAUGAu -3' miRNA: 3'- uUGCGCGUGUuaaaaucGCGGCUACU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 77535 | 0.68 | 0.975334 |
Target: 5'- uGugGCGCACucGUUgcaagcgguccagUUAGCGCCGuacuuUGAc -3' miRNA: 3'- -UugCGCGUGu-UAA-------------AAUCGCGGCu----ACU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 58629 | 0.69 | 0.972786 |
Target: 5'- uAACGcCGCGCAAU--UAGCcGCCGAc-- -3' miRNA: 3'- -UUGC-GCGUGUUAaaAUCG-CGGCUacu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 130475 | 0.69 | 0.969737 |
Target: 5'- cAACGCGCuGCGAUcggUAGCGCCuuUGc -3' miRNA: 3'- -UUGCGCG-UGUUAaa-AUCGCGGcuACu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 110985 | 0.69 | 0.966452 |
Target: 5'- cAGCGCGCACGAcucUUgcGCGUCGgcGGg -3' miRNA: 3'- -UUGCGCGUGUUa--AAauCGCGGCuaCU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 2401 | 0.7 | 0.955108 |
Target: 5'- cAACGCGCGCAAUc---GCGCCaaAUGGg -3' miRNA: 3'- -UUGCGCGUGUUAaaauCGCGGc-UACU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 11148 | 0.67 | 0.986597 |
Target: 5'- --aGCGCuucaaauugacgGCGGU--UAGCGCCGAUGc -3' miRNA: 3'- uugCGCG------------UGUUAaaAUCGCGGCUACu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 107493 | 0.67 | 0.988242 |
Target: 5'- aGGCGCGCACGuuca-GGCGCCu---- -3' miRNA: 3'- -UUGCGCGUGUuaaaaUCGCGGcuacu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 28067 | 0.67 | 0.988242 |
Target: 5'- cGCGUGCGCAAUUgguuGCcgGgCGAUGAc -3' miRNA: 3'- uUGCGCGUGUUAAaau-CG--CgGCUACU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 19691 | 0.66 | 0.995822 |
Target: 5'- cGGCGgGCACAgaacgccuucGUUUgccUGGCGCCGuuuccguUGAa -3' miRNA: 3'- -UUGCgCGUGU----------UAAA---AUCGCGGCu------ACU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 2627 | 0.66 | 0.993314 |
Target: 5'- cACGCgGCGCAuaaaUAGCGCgCGAUaGAg -3' miRNA: 3'- uUGCG-CGUGUuaaaAUCGCG-GCUA-CU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 128863 | 0.67 | 0.991552 |
Target: 5'- gGGCGUGCACGAcggcacguuggaauaUUUUAGCcCCGAa-- -3' miRNA: 3'- -UUGCGCGUGUU---------------AAAAUCGcGGCUacu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 46874 | 0.67 | 0.991058 |
Target: 5'- gGugGCGCGCGuggaaacGGUGUCGAUGu -3' miRNA: 3'- -UugCGCGUGUuaaaa--UCGCGGCUACu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 56099 | 0.67 | 0.991058 |
Target: 5'- cAACGCGCGguGUUcaGGCGCCa---- -3' miRNA: 3'- -UUGCGCGUguUAAaaUCGCGGcuacu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 96662 | 0.67 | 0.991058 |
Target: 5'- uGCGCGcCGCuAGUcaUAGCGCCcGUGGa -3' miRNA: 3'- uUGCGC-GUG-UUAaaAUCGCGGcUACU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 110940 | 0.67 | 0.991058 |
Target: 5'- aAGCGCGUACGcUUUUAGUucGUCGuAUGGu -3' miRNA: 3'- -UUGCGCGUGUuAAAAUCG--CGGC-UACU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 64696 | 0.67 | 0.990932 |
Target: 5'- uAACGUGCGCAcg-UUGGUcaacguuGCCGGUGc -3' miRNA: 3'- -UUGCGCGUGUuaaAAUCG-------CGGCUACu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 24716 | 0.67 | 0.989725 |
Target: 5'- aAACGCGCACAGU---AGCGCa----- -3' miRNA: 3'- -UUGCGCGUGUUAaaaUCGCGgcuacu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 72947 | 0.67 | 0.989151 |
Target: 5'- cAGCGCGCGCcgccaacGCGUgGGUGAc -3' miRNA: 3'- -UUGCGCGUGuuaaaauCGCGgCUACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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